Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l17
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071207-1|AAL48829.2|  195|Drosophila melanogaster RE25242p pro...    29   4.0  
AE013599-2493|AAF57848.2|  195|Drosophila melanogaster CG11419-P...    29   4.0  
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    28   9.1  

>AY071207-1|AAL48829.2|  195|Drosophila melanogaster RE25242p
           protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 267 HHVGRRIHKKTSVNCALIYIYRKSKSHSTLNSFFLLLTRTTNFQSYFNIKM*KLTEP 97
           H V  + HK+T  N + IYIY   K   +     + +   TNF     +++  LTEP
Sbjct: 70  HLVNIQFHKRT--NISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEP 124


>AE013599-2493|AAF57848.2|  195|Drosophila melanogaster CG11419-PA
           protein.
          Length = 195

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 267 HHVGRRIHKKTSVNCALIYIYRKSKSHSTLNSFFLLLTRTTNFQSYFNIKM*KLTEP 97
           H V  + HK+T  N + IYIY   K   +     + +   TNF     +++  LTEP
Sbjct: 70  HLVNIQFHKRT--NISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEP 124


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 249 SYGPHDAEWLPSPMDFSNAKGRAKPLPTVKCCPQASFEEGYVI 377
           +Y P D   LP  +DF+  K  ++ L   +C P  S +   V+
Sbjct: 177 TYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDLSSDHSPVL 219


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,132,665
Number of Sequences: 53049
Number of extensions: 649692
Number of successful extensions: 1439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)