Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8l14
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662... 130 3e-31
12_01_0284 + 2117288-2117509 127 3e-30
11_01_0276 + 2057486-2057707 127 3e-30
08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137 31 0.44
02_02_0240 + 8196140-8198248,8198381-8198650 30 0.59
10_08_0361 + 17207657-17207701,17208850-17209773 28 2.4
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 27 7.2
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 27 7.2
08_01_0566 - 5028512-5029150 26 9.6
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 26 9.6
>02_05_0025 -
25165438-25165708,25165807-25166048,25166191-25166222,
25167174-25167231,25167331-25167438
Length = 236
Score = 130 bits (315), Expect = 3e-31
Identities = 56/74 (75%), Positives = 66/74 (89%)
Frame = +2
Query: 140 SKMLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLA 319
++M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI LA
Sbjct: 162 AEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLA 221
Query: 320 DYEIHDGMNLELYY 361
DYEIHDGM LELYY
Sbjct: 222 DYEIHDGMGLELYY 235
>12_01_0284 + 2117288-2117509
Length = 73
Score = 127 bits (307), Expect = 3e-30
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +2
Query: 146 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 325
M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI L DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLRDY 60
Query: 326 EIHDGMNLELYY 361
EIHDGM LELYY
Sbjct: 61 EIHDGMGLELYY 72
>11_01_0276 + 2057486-2057707
Length = 73
Score = 127 bits (307), Expect = 3e-30
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +2
Query: 146 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 325
M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI L DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKDY 60
Query: 326 EIHDGMNLELYY 361
EIHDGM LELYY
Sbjct: 61 EIHDGMGLELYY 72
>08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137
Length = 174
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +2
Query: 149 LEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKD----HIKL 316
+++ G + ++ P DT+ D+K I + G R D+ L K L
Sbjct: 92 MQIIVKTLTGITITLEVRPSDTIDDVKAKIQDKVGIRSDQQHLVDVSAGSKQLDDGGSTL 151
Query: 317 ADYEIHDGMNLEL 355
ADY+IHD L L
Sbjct: 152 ADYDIHDESTLHL 164
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 30.3 bits (65), Expect = 0.59
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 209 DTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLEL 355
DTVG LK+ IA + +K L + KD++ LA Y I G+ + L
Sbjct: 734 DTVGSLKEQIAGELQLPANKQKLSVRTSFLKDNLTLAYYNIGPGVVINL 782
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 170 RLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 349
++ K + N DTV +K ++A G K + K+ KLADY I ++
Sbjct: 19 KMMKTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYNIMTNSSV 78
Query: 350 ELY 358
+LY
Sbjct: 79 DLY 81
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 140 SKMLEVTCNDRLGKKVRVKCNPDDTVGDLKKL 235
+K + CND+LGKKV DD+ + ++
Sbjct: 94 AKRVAEECNDQLGKKVGYSIRFDDSTSNATRI 125
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 143 KMLEVTCNDRLGKKVRVKCNPDDTVGD 223
++L++ N +G+K+R+KC D+ D
Sbjct: 33 QLLKMVINPEVGRKIRLKCRGGDSPQD 59
>08_01_0566 - 5028512-5029150
Length = 212
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 191 VKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLEL 355
V+ NP DTVG +K I A+ G + L +D LA+Y I NL L
Sbjct: 15 VEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYGIKKEANLHL 69
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 62 EAKQLKQIK-NYYLYILFHNKTES*FESKMLEVTCNDRLGKKVRVKCNPDDTVGDLKKLI 238
++K+ +Q + N Y Y+ +HN+ ++ +S E + K+ + N D + D +I
Sbjct: 381 QSKKTEQARRNLYRYMHYHNRYKAHTDSLKQEAKLKGDIQGKISISENKDSKIKDYSWVI 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,258,704
Number of Sequences: 37544
Number of extensions: 117439
Number of successful extensions: 320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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