Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8l10
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 65 6e-12
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 40 2e-04
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 28 0.91
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 2.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 3.7
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.7
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 25 4.8
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.4
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 25 8.4
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 64.9 bits (151), Expect = 6e-12
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Frame = +3
Query: 24 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDP-- 197
+ A++F+ + KCF++++P V K E ++ ++ ++ T+ I + V+V +
Sbjct: 17 SQAVHFYFDGSKPKCFLKDMPKGMMVTGIVKAEQWNNEANKWV-TSNNIKIRVQVDETFA 75
Query: 198 NDRILLSRVYSLEGMISFTSSTPGEHVICMXSNST-SWFSGSQLRVHLDIQVGEHAVXYA 374
N+ ++ + FT++ G H IC S S +WFS ++ R+H+D+ + A
Sbjct: 76 NNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDKYNLIA 135
Query: 375 NVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 500
+ +++ +L R+ L ++ I EQ QR RE FR T
Sbjct: 136 --SSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDT 175
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 39.9 bits (89), Expect = 2e-04
Identities = 34/148 (22%), Positives = 64/148 (43%)
Frame = +3
Query: 57 ERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLE 236
+R+CF E + ++ + V Y+ + GG + + + +P +I+ V +
Sbjct: 30 QRECFYENLRNNDQMSVTYQTNV-----GGDQLVS------MSIYNPAGQIMHQEVPNSM 78
Query: 237 GMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXYANVAQKEKLTELQLR 416
SFT PG+++ C +++ G V ++ H V Y + + L +
Sbjct: 79 AQYSFTVKNPGKYMYCFYNDA---LDGESKEVLFNV----HGVIYISDEDLDANNPLLGK 131
Query: 417 IRQLLDQVHQITKEQAYQRQREERFRQT 500
+RQL D + ++ EQ Y RE R T
Sbjct: 132 VRQLHDTISKVKHEQEYFVARERIHRNT 159
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 0.91
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 66 CFIEEIPDDTTVI-VNYKVELYDPKSGGFMQTTPGIGMHV 182
C++ ++ DDT ++ +NY + Y PK Q GI + V
Sbjct: 49 CYMFKLMDDTGIVELNYSLSKYSPKFEMLRQLQLGISVFV 88
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 72 IEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 221
I + DD T+I+ +++ P G+ ++PGI + +PN I+ R
Sbjct: 157 IASVGDDCTLII-WRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 205
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 75 EEIPDDTTVIVNYKVELYDPKSGGF 149
+++ DD NYKV L KSGGF
Sbjct: 820 QQLIDDFHTNENYKVFLLSTKSGGF 844
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 262 VLDVNEIIPSNE*TRDNSILSFGSRTS 182
V D+ EI+PS T NS+ GS T+
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTT 559
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 264 PGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXYANVA-QKEKLTELQLRIRQLLDQV 440
PG H I + + S +G+Q + +++ + +A Q K+ E ++ R + +
Sbjct: 117 PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIE-PIQSRCAILRY 175
Query: 441 HQITKEQAYQR 473
++T +Q QR
Sbjct: 176 SRLTDQQVLQR 186
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 201 DRILLSRVYSLEGMISFTSS 260
DR+ LS +Y+L+ ++ F SS
Sbjct: 170 DRVFLSEIYALKILVEFLSS 189
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 242 HSFQRIDSRQQYSIIRIADFNVHAYAR 162
H FQR+ + II I D+ V +Y R
Sbjct: 326 HMFQRLKEGYRNIIIAIVDYGVISYIR 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,363
Number of Sequences: 5004
Number of extensions: 36780
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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