Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8l10
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 64 5e-11
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 50 1e-06
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 48 4e-06
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 28 4.8
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 27 6.4
01_01_0934 + 7374381-7374652,7375339-7375864 27 6.4
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 27 8.5
06_03_0941 + 26179682-26182327 27 8.5
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 64.5 bits (150), Expect = 5e-11
Identities = 45/163 (27%), Positives = 78/163 (47%)
Frame = +3
Query: 6 ALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVE 185
A L CA A++ + + KC EEI + V+ +Y + +Y+ + P I V+
Sbjct: 23 ACLLLCAEAVWLDLPQSGTKCVSEEIQSNVVVLADYAL-MYE----SHPSSHPTIA--VK 75
Query: 186 VRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAV 365
V P L + G +FT+S G ++ C +S GS + ++LD ++G A
Sbjct: 76 VTSPYGNTLHHNENATVGQFAFTTSEAGNYLACFWIDSAE--KGSGISINLDWKIGIAAK 133
Query: 366 XYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 494
+ +A+KEK+ ++L +R+L V I + Y + RE R
Sbjct: 134 DWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMR 176
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 50.0 bits (114), Expect = 1e-06
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = +3
Query: 24 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPK-SGGFMQTTPGIGMHVEVRDPN 200
A AL F + G KC +EI ++ V+ Y V DP + + I + V N
Sbjct: 35 ARALRFDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSHRISLRVTSPYGN 94
Query: 201 DRILLSRVYSLEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXYANV 380
V S G +FT++ G+++ C + + D + G A ++NV
Sbjct: 95 SVHYAENVPS--GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRSGVAAKDWSNV 150
Query: 381 AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 494
A+K ++ +++ +++L + + I +E Y R+REE +
Sbjct: 151 AKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQ 188
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 48.0 bits (109), Expect = 4e-06
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 12/170 (7%)
Frame = +3
Query: 24 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPND 203
A+AL F + G KC ++I + Y V + P+ GG ++ + P
Sbjct: 26 AAALRFDLQSGHTKCISDDIKVGAMAVGKYHVVV--PEGGGSTSSSSSSSSSAQPLLPES 83
Query: 204 RILLSRVYS------------LEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQ 347
+ RV S G +FT+S G+++ C + + + D +
Sbjct: 84 HRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWR 141
Query: 348 VGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 497
G A + NVA+K ++ +++ +++L D ++ I +E Y R REE ++
Sbjct: 142 SGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQE 191
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 35 VLPHSRRRTKMFYRRNT*RYHSYSKLQSR 121
V+P RRR + RRN RY S +KL R
Sbjct: 10 VMPTRRRRQRRRRRRNRHRYRSIAKLGKR 38
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 434 IQQLSNPELKFGQFFLLCNICIVYSMLTNLNVKMNS 327
I L P + FFLL CIVY M T++++ NS
Sbjct: 432 ISLLREPMMLITGFFLLFMACIVY-MRTDMSISKNS 466
>01_01_0934 + 7374381-7374652,7375339-7375864
Length = 265
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +2
Query: 17 RLCFSFVLPHSRRRTKMF------YRRN-T*RYHSYSKLQSRVIRSEIW 142
RLC F PH+++ + F Y+RN T H LQS + +++W
Sbjct: 134 RLCTDFFTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVW 182
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 321 QLRVHLDIQVGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 494
QL L Q GE ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGEDL---SSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRR 156
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 81 IPDDTTVIVNYKVELYDPKSGGFMQTTPG 167
+PD T V Y LYDPK G +Q G
Sbjct: 457 LPDRNTPDVVYYQSLYDPKMGWKIQVVDG 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,588
Number of Sequences: 37544
Number of extensions: 232823
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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