Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8l10
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 246 5e-66
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 184 4e-47
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 67 6e-12
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 30 0.82
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 30 0.82
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 30 0.82
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 30 0.82
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 28 3.3
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 4.4
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 4.4
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 246 bits (603), Expect = 5e-66
Identities = 114/163 (69%), Positives = 136/163 (83%)
Frame = +3
Query: 12 LADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVR 191
LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IGMHVEV+
Sbjct: 10 LATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIGMHVEVK 68
Query: 192 DPNDRILLSRVYSLEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXY 371
DP D+++LS++Y+ EG +FTS+TPGEHVIC+ SNST+WF+G+QLRVHLDIQ G+HA Y
Sbjct: 69 DPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDY 128
Query: 372 ANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 500
A +AQK+KL ELQLRIRQLLDQV QITKEQ YQR REERFRQT
Sbjct: 129 AQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQT 171
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 184 bits (447), Expect = 4e-47
Identities = 82/131 (62%), Positives = 105/131 (80%)
Frame = +3
Query: 12 LADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVR 191
LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IGMHVEV+
Sbjct: 10 LATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIGMHVEVK 68
Query: 192 DPNDRILLSRVYSLEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXY 371
DP D+++LS++Y+ EG +FTS+TPGEHVIC+ SN+T+WF+G+QLRVHLDIQ G+HA Y
Sbjct: 69 DPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAGDHAQDY 128
Query: 372 ANVAQKEKLTE 404
A V ++ KL E
Sbjct: 129 AQVEEERKLDE 139
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 67.3 bits (157), Expect = 6e-12
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Frame = +3
Query: 24 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPND 203
A +L F++ E+KC EEI + V Y+ S G T + V D
Sbjct: 14 AHSLRFYVPPKEKKCLKEEIHKNVVVTGEYEF------SQGIQYTGS-----IHVTDTRG 62
Query: 204 RILLSR--VYSLEGMISFTSSTPGEHVICMXSNSTSWFSGSQLRVHLDIQVGEHAVXYAN 377
L R L+G +FT+ IC+ ++ + G + V L ++ G A Y +
Sbjct: 63 HTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYDD 122
Query: 378 VAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 500
+A+ EKL L++ +R+L D ITK+ A+ RQREE R T
Sbjct: 123 IAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNT 163
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 327 RVHLDIQVGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 497
++ DI E A+ +AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 327 RVHLDIQVGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 497
++ DI E A+ +AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 327 RVHLDIQVGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 497
++ DI E A+ +AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 327 RVHLDIQVGEHAVXYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 497
++ DI E A+ +AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 133 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 185
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 235 SNE*TRDNSILSFGSRTSTCMPMPGVVCMNPP 140
SNE +NS+LS S S+ +P+PG++ + PP
Sbjct: 6 SNE--TNNSLLSSASSFSSFLPVPGILELIPP 35
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 128 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 247
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 128 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 247
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 5 SIACRLC----FSFVLPHSRRRTKMFYRRNT*RYHSYSK 109
S+ C LC S LPH+ + F RR+ Y+S+SK
Sbjct: 28 SVQCGLCRQNNASVTLPHAPGAIRHFKRRHRKTYNSFSK 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,326
Number of Sequences: 27780
Number of extensions: 214228
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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