Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l09
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    33   0.044
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   1.6  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    27   2.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.9  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.8  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.0  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   5.0  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   6.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   6.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   8.8  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   8.8  

>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = +1

Query: 112 QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNINTNSIPSLM 291
           + E +S+ N     S D   E     +D   + + S         +S  N + +   S  
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285

Query: 292 QFPVRQPKDS-EEQDNWKSKTDGDSDSNSEQGNMYT 396
                + + S E+ D+  S +D DS S+SE GN  T
Sbjct: 286 DSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNT 321


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 580  PCSDLDPYSDLRPFSDLDPYLVLGSFSDPGPYLDQTPYW 464
            P   L   SDLR   DL+   V+  FS+ GP+ +    W
Sbjct: 955  PYEALSHLSDLRGMVDLEKVPVVTGFSEVGPWGNSRTRW 993


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 559 YSDLRPFSDLDPYLVLGSFSD 497
           + D RP S +DPYLV G  ++
Sbjct: 334 FEDRRPASSIDPYLVTGIITE 354


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 297 KLHKGWYRVGIYIVNRFSSDH 235
           K+ + +YR GIYI+NR S ++
Sbjct: 536 KIAEAYYRYGIYILNRKSENY 556


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 247 ESVDNINTNSIPSLMQFPVRQPKDSEEQDNWKSKTDG 357
           E  D +  +SIP ++      P+  ++  NW+ KT G
Sbjct: 382 EVYDTLREDSIPEVVIVKKTYPQTKKKNRNWRLKTIG 418


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 85  TEAVKKPEKQDEDNS-DSNTQRRHSGDR-GREKYRRWTDR 198
           +++ +K +K  +D   DS   R HS  +    K R WTDR
Sbjct: 617 SKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDR 656


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 516 TKYGSKSENGLRSEYGSRSEH 578
           + YG+  +N L SEY SR  H
Sbjct: 28  SNYGTSMDNELSSEYASRGMH 48


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 VDNINT-NSIPSLMQFPVRQPKDSEEQD 333
           +++IN  NSI  ++ FPV+  KD E  D
Sbjct: 34  IEHINIMNSIDGVISFPVKTAKDCENID 61


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 395 VYIFPCSELESESPSVLDFQLSCSSESLGCLT-GN 294
           V+ FPC E+  ++PS ++ ++  + + LG  T GN
Sbjct: 9   VWPFPCDEMNQKTPSTVE-EIRIALQELGLSTNGN 42


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 266 IPTLYHPLCNFLSDN 310
           +PTLYH  C  L+DN
Sbjct: 526 LPTLYHGSCALLTDN 540


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 278 YHPLCNFLSDNPKILRNRTTGSLKLMETQILTQNKEI 388
           YHP+C    D P  L     G+  +    I T+N +I
Sbjct: 167 YHPMCPIEQDKPLSLEQCWIGTEDMTLPDIDTENPQI 203


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 FQYGVWSKYGPGSENEPSTKY--GSKSENGLRSEYGSRSEHGSRSECGTG 605
           F++G      PGS   PST Y   + SE+G  S Y S+   G  S   +G
Sbjct: 309 FEHGSAGFPIPGSV--PSTSYHANTASEDGFSSSYNSQGLFGISSPLSSG 356


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 296 FLSDNPKILRNRTTGSLKLMETQILTQNKEICIQAQMDHAQCLLQVLWDLI*FAPF 463
           +L +  K L    T  L  ++ QI   ++ +C++  +D  + L Q+  D++   PF
Sbjct: 33  WLEEKSKYL-GEMTRELNEVQDQIAPYDRRVCMEQLVDLTRRLQQIRHDILPRQPF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.124    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,301
Number of Sequences: 5004
Number of extensions: 52628
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)