Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l09
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    27   0.37 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    26   1.1  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    26   1.1  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 492 PGSENEPSTKYGSKSENGLRSE 557
           PG+   P T YGSK  N  RSE
Sbjct: 236 PGTAWPPETSYGSKEINDFRSE 257


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 480  SKYGPGSENEPSTKYGSKSENGLRSEYGSRSEHGSRS 590
            S+   GS +   ++ GS S  G R+  GSRS   SRS
Sbjct: 1067 SRSRSGSGSRSRSRSGSGSRAGSRAGSGSRSRSRSRS 1103



 Score = 25.8 bits (54), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 480  SKYGPGSENEPSTKYGSKSENGLRSEYGSRSEHGSRSECGTGSEYG 617
            S+ G GS +   +  GS++ +   S   SRS   SRS   +GS  G
Sbjct: 1069 SRSGSGSRSRSRSGSGSRAGSRAGSGSRSRSRSRSRSRSRSGSAKG 1114



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 498  SENEPSTKYGSKSENGLRSEYGSRSEHGSRSECGTGS 608
            S +   ++ GS++ +G RS   SRS   SRS    GS
Sbjct: 1079 SRSGSGSRAGSRAGSGSRSRSRSRSRSRSRSGSAKGS 1115



 Score = 24.6 bits (51), Expect = 2.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 498  SENEPSTKYGSKSENGLR-SEYGSRSEHGSRSECGTGS 608
            S +   ++ GS++  G R S   SRS  GSRS   +GS
Sbjct: 1144 SGSRSRSRSGSQASRGSRRSRSRSRSRSGSRSRSRSGS 1181



 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 495  GSENEPSTKYGSKSENGLRSEYGSRSEHGSRSECGTGS 608
            GS+    ++  S S +  RS  GS S  GSR+  G+ S
Sbjct: 1060 GSQRRSRSRSRSGSGSRSRSRSGSGSRAGSRAGSGSRS 1097



 Score = 23.0 bits (47), Expect = 7.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 495  GSENEPSTKYGSKSENGLRSEYGSRSEHGSRSECGTGS 608
            G    P+TK   +  +      GS+    SRS  G+GS
Sbjct: 1038 GESGAPATKRKRRIASDEEDSDGSQRRSRSRSRSGSGS 1075



 Score = 23.0 bits (47), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 495  GSENEPSTKYGSKSENGLRSEYGSRSEHGSRSECGTG 605
            GS     ++  S+S +  RS  GS     SRS  G+G
Sbjct: 1088 GSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSRSGSG 1124


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 112  QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNIN 267
            QDE  +    Q      +  E  RRW D+    A  P  P +  R  + +IN
Sbjct: 847  QDEKVASGGVQSDIRKRQREETMRRWQDQWTTGAGQPGAPGLKTRRLIPDIN 898


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.307    0.124    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,235
Number of Sequences: 2352
Number of extensions: 13413
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)