Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l09
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 498 SENEPSTKYGSKSENGLRSEYGSRSEHGSRS 590
           + N    ++ SKS+N   +++  ++ H S+S
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAHHSSKS 456


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 545  PQVRIWVQVRTWVPVRMWDRVR 610
            P +R    + TW   R W+R+R
Sbjct: 1180 PYLRTAAAILTWNEKRFWERLR 1201


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +2

Query: 299 LSDNPKILRNRTTGSLKLMETQILTQNKEICIQAQMDHAQCLLQVLWDLI 448
           L+   +I R   + S   +  + ++   ++CI A +   Q +L ++W +I
Sbjct: 599 LTKTNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMII 648


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 342 LPVVLFLRIFGLSDRKLHKGWYRVGIY 262
           L VV+ L   GL   + +KGW++  I+
Sbjct: 4   LVVVVLLLAVGLGAGQNNKGWWKNAIF 30


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +2

Query: 299 LSDNPKILRNRTTGSLKLMETQILTQNKEICIQAQMDHAQCLLQVLWDLI 448
           L+   +I R   + S   +  + ++   ++CI A +   Q +L ++W +I
Sbjct: 689 LTKTNRIARIFDSASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMII 738


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 534 SENGLRSEYGSRSEHGSRSECGTGSEYG 617
           ++ GL   +G    HG  S   TGS  G
Sbjct: 130 NQTGLHGLHGLHGLHGLSSSAPTGSSCG 157


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 154 SGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNIN 267
           S +  +EK+RRW        +    P   R E +D+++
Sbjct: 445 SFEDAKEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVD 482


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 311 GCLTGNCIRDGIEL 270
           G L G C R+GIEL
Sbjct: 551 GTLYGRCKREGIEL 564


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 196 RGRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVRQP 312
           +GR     P+  V  +  S+DNIN  S  S    P+  P
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLSTESKADLPLLCP 235


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 507 EPSTKYGSKSENGLRSEYGSRSEHGSRSECGTGSEYG 617
           EP +   + +  G R  +G  S+H  +   G  + YG
Sbjct: 175 EPGSTGTTTTSTGTRLLHGILSQHPQQHGLGVQNGYG 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.124    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,198
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)