Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l01
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    31   0.14 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    29   0.57 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   4.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   7.0  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   9.2  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 242 YIPQRYVLGVLGLFALANSFTMRVCLSMTITQMVVQS 352
           YIP++ VLG+  L  +AN F+ R+ +   +T+ V Q+
Sbjct: 140 YIPRKRVLGLSKLARIANMFSRRLQVQERLTKQVAQA 176


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 263 THTFAVCR*LCLIFDAIPLKSS*MNSNIAQLKINNISTEDSS 138
           T T A+C    L+    PL+   + +N     I+NIST+DSS
Sbjct: 445 TATSAICN---LVLKFSPLREKFLTTNFIDTLISNISTKDSS 483


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 467 RYDWDEATQGFLLSAFYYGY-VLTHLPG 547
           +YD ++    F+L AF+ G   L HLPG
Sbjct: 271 KYDLEKILDDFILLAFFVGNDFLPHLPG 298


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 483 KQHKASYLVLSTTDTY*LICLEVF*LKSLEEN 578
           K+H  S L+++  DTY L C E+    S  EN
Sbjct: 744 KKHLKSQLMVANLDTYSLDCYEIHEFPSEWEN 775


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 506 SAFYYGYVLTHLPGGLLAEKF 568
           +AFY GY++   P  LL ++F
Sbjct: 107 TAFYLGYLVFEFPASLLLQRF 127


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 27   YLLYLKSCFVS-SM*YFFFVLR--MYDVC-NVYL*HIS 128
            Y +Y KSC +   + YFFF++   M +V  NV+L H S
Sbjct: 891  YWMYFKSCSIGLILLYFFFIISGIMMNVATNVWLKHWS 928


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 512 FYYGYVLTHLPGGLLAEKF 568
           FY G+V+  +PG +L ++F
Sbjct: 133 FYVGFVIGQIPGHMLLQRF 151


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 639 TANGVKAVATEVSNSPKPSVHFPP 568
           T   VKA +T ++  PK ++++PP
Sbjct: 568 TVESVKATSTPLNVRPKYNINYPP 591


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 392 GQGMFLQ*CVLMIDFGRPSELW 327
           G  +FL     +IDF RPS LW
Sbjct: 18  GISIFLMMITRVIDFSRPSLLW 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,910
Number of Sequences: 5004
Number of extensions: 55401
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)