Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l01
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069...    43   2e-04
11_01_0557 + 4394754-4396040                                           41   7e-04
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    40   0.002
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991...    36   0.027
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    34   0.083
12_01_0081 - 657672-657713,657993-658151,658359-658919                 30   1.3  
01_05_0180 + 18980059-18980165,18980280-18980378,18982007-189820...    29   3.1  
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469...    29   4.1  
11_01_0080 - 619886-619979,620298-620815                               28   5.4  
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821...    28   5.4  
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344...    28   7.2  
05_05_0282 + 23813500-23813584,23813676-23813734,23813940-23814368     28   7.2  

>09_06_0242 -
           21806370-21806483,21806574-21806660,21806865-21806917,
           21806999-21807140,21807406-21807501,21808617-21808785,
           21808859-21808939,21809032-21809106,21810322-21810387,
           21811013-21811158,21811898-21812344
          Length = 491

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +2

Query: 467 RYDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           +Y W+ +T G + S+F++GY L+ LPGG LA+ F
Sbjct: 162 QYGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLF 195


>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 464 DRYDWDEATQGFLLSAFYYGYVLTHLPGGLLAEK 565
           D    ++A +G +LS FYYGYVL+ +PGG  A++
Sbjct: 36  DAVGTNQANKGMILSMFYYGYVLSQIPGGWAAQR 69


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           + W  AT G + S+F++GY+LT + GG+ A++F
Sbjct: 213 FGWSPATVGLIQSSFFWGYLLTQILGGIWADRF 245


>01_01_1227 +
           9912646-9913056,9913306-9913413,9913517-9913672,
           9914110-9914325,9914436-9914645,9914722-9914859,
           9915076-9915177,9915508-9915603
          Length = 478

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAE 562
           + W+  T G + S+F++GY+LT + GG+ A+
Sbjct: 151 FGWNPQTVGLIQSSFFWGYLLTQIAGGIWAD 181


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 467 RYDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           +Y W  +  G + S+F +GYV + + GG LA+++
Sbjct: 153 QYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRY 186


>12_01_0081 - 657672-657713,657993-658151,658359-658919
          Length = 253

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 526 VSVVESTK*EALCCFIPVVSISPSVNNHCFITDTFCDFCSRI 401
           VS+  +   E  C ++  +   P+ +NHCF   ++  FC RI
Sbjct: 102 VSINRAAPQEPDCLYVLNLRTHPTTSNHCFEVLSYGGFCERI 143


>01_05_0180 +
           18980059-18980165,18980280-18980378,18982007-18982069,
           18982622-18982757,18983698-18983881,18984276-18984397,
           18984477-18984617
          Length = 283

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 608 KLAIVPNRASIFLQTFQLKD 549
           KL ++P+++ IFLQ F+LKD
Sbjct: 99  KLEVMPSKSFIFLQLFELKD 118


>08_02_1369 -
           26445725-26445812,26446443-26446529,26446720-26446928,
           26447501-26447583,26447672-26447720,26447800-26447959,
           26448795-26448891,26449424-26449535,26449637-26449702,
           26450135-26450206,26450413-26450487,26451139-26451266,
           26451551-26451772,26452084-26452355,26452447-26452543,
           26452633-26452738,26454834-26455220
          Length = 769

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 639 TANGVKAVATEVS--NSPKPSVHFPPNFSAKRPP 544
           TA    A AT  +  N P P    PP FS+ RPP
Sbjct: 41  TATPATATATPATPPNPPAPPAAPPPTFSSSRPP 74


>11_01_0080 - 619886-619979,620298-620815
          Length = 203

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 529 YVSVVESTK*EALCCFIPVVSISPSVNNHCFITDTFCDFCSRI 401
           Y ++  S   E  C ++  +   P+ +NHCF   ++  FC RI
Sbjct: 91  YDAMAVSINQEPDCLYVLNLRHHPTTSNHCFEVLSYGVFCERI 133


>01_06_1363 -
           36681605-36681789,36681875-36681908,36682017-36682154,
           36682578-36682724,36682821-36682865,36683043-36683331,
           36683443-36683669,36684109-36684528
          Length = 494

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           Y W  +  G + S+F +GY+++ + GG L + +
Sbjct: 129 YGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYY 161


>08_02_1367 +
           26432425-26432622,26434071-26434162,26434337-26434403,
           26434519-26434638,26434792-26435023,26435525-26435606,
           26435985-26436117,26436332-26436537,26436633-26436758,
           26437208-26437907
          Length = 651

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 274 GFIRFSEFLHDASMFEHDHNSDGR 345
           GF++ + F H + +FE+  +SDG+
Sbjct: 599 GFVKLTAFNHSSLLFEYKKSSDGK 622


>05_05_0282 + 23813500-23813584,23813676-23813734,23813940-23814368
          Length = 190

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 639 TANGVKAVATEVSNSPKPSVHFPPNFSAKRPPGK*VS 529
           +  G+ A AT+V  +  P+    P  + KRPPG+ +S
Sbjct: 120 SVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMS 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,243
Number of Sequences: 37544
Number of extensions: 317499
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)