Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l01
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58737-2|AAM69081.1|  479|Caenorhabditis elegans Hypothetical pr...    49   3e-06
U58737-1|ABC48238.1|  474|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z48055-1|CAA88134.1|  544|Caenorhabditis elegans Hypothetical pr...    37   0.011
Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z48055-10|CAA88135.1|  573|Caenorhabditis elegans Hypothetical p...    35   0.056
Z36282-3|CAA85289.1|  573|Caenorhabditis elegans Hypothetical pr...    35   0.056
Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    34   0.075
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      34   0.075
U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    29   2.8  
U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine rece...    28   6.5  
U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine rece...    28   6.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    28   6.5  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF039044-9|AAG24119.1|  168|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U58737-2|AAM69081.1|  479|Caenorhabditis elegans Hypothetical
           protein ZK54.1a protein.
          Length = 479

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 33/103 (32%), Positives = 51/103 (49%)
 Frame = +2

Query: 251 QRYVLGVLGLFALANSFTMRVCLSMTITQMVVQSQSSEHIIGETCPDPSLNSTTEVAESI 430
           +R+V+ +L L   AN + MR  LS+ I +M   ++              +N TT      
Sbjct: 37  RRHVVAILALLGFANIYAMRANLSIAIVEMTSGTERK------------VNGTT------ 78

Query: 431 SNETMIIHRGRDRYDWDEATQGFLLSAFYYGYVLTHLPGGLLA 559
                 +H   D  +W   TQG +LS+F+YGY+++ LPGG LA
Sbjct: 79  ------LHVLGDFENWTPMTQGVVLSSFFYGYIVSQLPGGYLA 115


>U58737-1|ABC48238.1|  474|Caenorhabditis elegans Hypothetical
           protein ZK54.1b protein.
          Length = 474

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 33/103 (32%), Positives = 51/103 (49%)
 Frame = +2

Query: 251 QRYVLGVLGLFALANSFTMRVCLSMTITQMVVQSQSSEHIIGETCPDPSLNSTTEVAESI 430
           +R+V+ +L L   AN + MR  LS+ I +M   ++              +N TT      
Sbjct: 32  RRHVVAILALLGFANIYAMRANLSIAIVEMTSGTERK------------VNGTT------ 73

Query: 431 SNETMIIHRGRDRYDWDEATQGFLLSAFYYGYVLTHLPGGLLA 559
                 +H   D  +W   TQG +LS+F+YGY+++ LPGG LA
Sbjct: 74  ------LHVLGDFENWTPMTQGVVLSSFFYGYIVSQLPGGYLA 110


>Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical
           protein C38C10.2 protein.
          Length = 493

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 54/105 (51%)
 Frame = +2

Query: 254 RYVLGVLGLFALANSFTMRVCLSMTITQMVVQSQSSEHIIGETCPDPSLNSTTEVAESIS 433
           R+ L ++  F    ++ MR  +S  +  MV ++++      +T  +       E+    S
Sbjct: 15  RFALSLVMFFGCLVTYMMRTNMSFAVVCMVNENKT------DTGVEKVSRCGKEMTPVES 68

Query: 434 NETMIIHRGRDRYDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           N ++I       +DWD+ T G +LS+F+YGY+ + + GG LA ++
Sbjct: 69  NSSVI-----GEFDWDKQTTGMVLSSFFYGYIGSQIIGGHLASRY 108


>Z48055-1|CAA88134.1|  544|Caenorhabditis elegans Hypothetical
           protein T07A5.3 protein.
          Length = 544

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 476 WDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           W  A  G + S+F+YGY  + +P G+LA KF
Sbjct: 93  WTGAEVGMMESSFFYGYAASQIPAGVLAAKF 123


>Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical
           protein K10H10.1 protein.
          Length = 445

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           + W++   G +LS F++GY LT +  G +A+K+
Sbjct: 53  FAWNKTDSGTVLSCFFWGYALTQVFAGRIADKY 85


>Z48055-10|CAA88135.1|  573|Caenorhabditis elegans Hypothetical
           protein K10G9.1 protein.
          Length = 573

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 WDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           W     G + S+F+YGY  + +P G++A KF
Sbjct: 93  WTGTEVGMMESSFFYGYAASQIPAGVIAAKF 123


>Z36282-3|CAA85289.1|  573|Caenorhabditis elegans Hypothetical
           protein K10G9.1 protein.
          Length = 573

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 WDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           W     G + S+F+YGY  + +P G++A KF
Sbjct: 93  WTGTEVGMMESSFFYGYAASQIPAGVIAAKF 123


>Z22177-5|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           ++W       + S+++YGY++T +P G LA KF
Sbjct: 113 FNWTIDELSVMESSYFYGYLVTQIPAGFLAAKF 145


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 470 YDWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           ++W       + S+++YGY++T +P G LA KF
Sbjct: 100 FNWTIDELSVMESSYFYGYLVTQIPAGFLAAKF 132


>U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical
           protein K08F11.5 protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +2

Query: 218 RRILNRVIYIPQRYVLGVLGLFALANSFTMRVCLSMTITQMVVQSQSSEHIIGETCPDPS 397
           R+ L RV  I  R   G L    L N F  ++C  + +T   ++    +  + + CPD  
Sbjct: 190 RKALIRVFKICDRDNDGYLSDTEL-NDF-QKLCFGIPLTSTALEDV--KRAVSDGCPDGV 245

Query: 398 LNSTTEVAESISNETMIIHRGRDRYDW 478
            N +  +A  +    + I RGR    W
Sbjct: 246 ANDSLMLAGFLYLHLLFIERGRHETTW 272


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 473 DWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           DW    QG++ SAF  G ++    GG +A+KF
Sbjct: 102 DWSSDEQGYIFSAFNAGLLVMLFTGG-MADKF 132


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 473 DWDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           DW    QG++ SAF  G ++    GG +A+KF
Sbjct: 88  DWSSDEQGYIFSAFNAGLLVMLFTGG-MADKF 118


>U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical
           protein F21F8.11 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 WDEATQGFLLSAFYYGYVLTHLPGGLLAEKF 568
           W  + QG+++SA + G  +   P G+L ++F
Sbjct: 117 WSVSWQGYIVSAAFLGGFIFSYPAGVLVDRF 147


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 359 SEHIIGETCPDPSLNSTTEVA 421
           +E ++ E  P+PS+N TTE+A
Sbjct: 157 TEEVLDEEEPEPSVNGTTEIA 177


>U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform b protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 618 VATEVSNSPKPSVHFPPNFSAKR 550
           +  E+ N PK    FPPNFS  R
Sbjct: 182 ITMEIWNPPKQCTGFPPNFSMPR 204


>U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform a protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 618 VATEVSNSPKPSVHFPPNFSAKR 550
           +  E+ N PK    FPPNFS  R
Sbjct: 182 ITMEIWNPPKQCTGFPPNFSMPR 204


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 257 YVLGVLGLFALANSFTMRVCLSMTITQMVVQSQSSEHIIGETCPDPSLNSTTEVAESISN 436
           Y  G+LG     N   +R C   T+   +V    S++++ +   +PS  + T  A++I+ 
Sbjct: 226 YYRGMLGTTQWEN---LRQCCPDTLNNPLVDCDYSKYVVFDNFGNPSPRNDTNDAQAIAC 282

Query: 437 ETMIIH 454
             M+I+
Sbjct: 283 GKMVIN 288


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 359 SEHIIGETCPDPSLNSTTEVA 421
           +E ++ E  P+PS+N TTE+A
Sbjct: 157 TEEVLDEEEPEPSVNGTTEIA 177


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 71  FFFRSQNV*RM*CLSITYIHKVVNCLQY*C-Y*FLIVQYWNSFKMTLTGWRRILNRVIYI 247
           FFF+  N+ +    S+ Y  ++VNCL+    Y   +     S   +  GWRR+   V Y 
Sbjct: 627 FFFQVSNMRK----SVKYTFEIVNCLKSTSLYSQGMQPVMYSMMESANGWRRVGENVCYF 682

Query: 248 PQRYV 262
              Y+
Sbjct: 683 RNLYI 687


>AF039044-9|AAG24119.1|  168|Caenorhabditis elegans Hypothetical
           protein F48G7.10 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 478 PVVSISPSVNNHCFITDTFCDFCSRIERGV 389
           P VS +   N H +   TFCD C  +  G+
Sbjct: 108 PQVSTNHHFNKHFYTRPTFCDHCGSLLYGL 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,866
Number of Sequences: 27780
Number of extensions: 300469
Number of successful extensions: 858
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)