Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l01
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.8  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 9   LLTKIPYLLYLKSCFVSSM*YFFFVL 86
           L TK P+L+ L SCF  +M   +FV+
Sbjct: 40  LSTKPPFLVQLHSCF-QTMDRLYFVM 64


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 238 YLHTAKVCVGCAGFIRFS 291
           Y + A  C GC GF R S
Sbjct: 197 YHYNALTCEGCKGFFRRS 214


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 350 FGRPSELWSCSNIL 309
           +G+P ++W+C  IL
Sbjct: 89  YGKPVDIWACGVIL 102


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 163 ITSVLKTVHNFMDICYR*TL---HTSYILRTKKKYYIELTKHDFKYNR 29
           +  +L TV   +++ +   L   +T Y+LRTKK         ++ Y R
Sbjct: 248 LNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLR 295


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 163 ITSVLKTVHNFMDICYR*TL---HTSYILRTKKKYYIELTKHDFKYNR 29
           +  +L TV   +++ +   L   +T Y+LRTKK         ++ Y R
Sbjct: 248 LNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLR 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,818
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)