Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k22
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   4.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.3  

>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 235 VRQRVLARPLAQRVAPAPPPLRHAVPQAPQARRCTYVINDEQ 360
           VR+    +  A++ AP PP +   + + P  +    V+ DE+
Sbjct: 16  VREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLDEE 57


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 203 PRSASGYWRTGDHR*VASWELCK*KSLWAWAHQ 105
           PRSAS Y  +   R + S  L   KSLW  +H+
Sbjct: 319 PRSASNYEFSNLRRLMVSESLYSSKSLWPHSHK 351


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 543 ACVGTWTPRRQIFLSTMKVTEQSRTLVL 460
           A +G W P R +F   + +T   R LVL
Sbjct: 60  ATIGDWYPERSVFQWLIALTATPRLLVL 87


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 2    NTLTPQQFAKGPAKSSLLTESEAFAVLMNILSSNADVPMPRGFSTCRVPRKQLIGGPQSS 181
            +TL      +     S+L E EA  V    L         R  S+ R P +QLI   QS+
Sbjct: 898  STLKHDDIMEASQTESILVEKEATRVANEAL---------RAVSSFRRPPRQLIPPQQST 948

Query: 182  NIP 190
            N+P
Sbjct: 949  NVP 951


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 253 ARPLAQRVAPAPPPLRHAVPQAPQA 327
           A P     APAPPP     P AP A
Sbjct: 465 AAPPLPPAAPAPPPAPAPAPAAPVA 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,831
Number of Sequences: 5004
Number of extensions: 36454
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)