Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k21
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    29   2.9  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    28   5.0  
08_01_0045 + 322679-323347                                             27   8.8  
04_04_0943 - 29554802-29554829,29555630-29555958                       27   8.8  
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781     27   8.8  
03_02_0525 - 9138107-9138237,9138327-9139301,9139379-9139507,913...    27   8.8  
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784...    27   8.8  

>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 414 ENEGPVTVDDLPLTFQVKYLGQSDARGLWGIKHTRKPVDL 533
           E E PV   + P  F + + G +D   L+GIK+T+K ++L
Sbjct: 353 EVEEPVQ-SNKPADFDLLFAGDTDDEFLFGIKYTKKSMNL 391


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -2

Query: 582 PEAGSGPEVKLSLQPP*DPLVSWCA*CPTTLARRSVQGTSPETSMVDHLPSQDLRS 415
           P A   P  K S + P  P   WC  CP++L         P TS V+ LP   L S
Sbjct: 375 PLATQYPLPKDSTEQPFKPYYCWCPPCPSSLQYSVTPLHMPVTS-VEPLPLPPLSS 429


>08_01_0045 + 322679-323347
          Length = 222

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 443 STIDVSGEVPWTERRARVVGHQAHQETSGSHGGCSESFT 559
           S  D SG  PW  R ARVV  + H    G  G CS + +
Sbjct: 59  SAADCSGS-PW--RNARVVLRRRHATGGGGGGACSPALS 94


>04_04_0943 - 29554802-29554829,29555630-29555958
          Length = 118

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 494 VVGHQAHQETSGSHGGCSESFTSGPDPA 577
           VVG   H+   G HGGC      GPD A
Sbjct: 86  VVGSDVHRR--GVHGGCRSEEEEGPDRA 111


>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
          Length = 551

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 574 RIWPGGKAFAAATMRSTGFLVCLMPHNPRA-SLCP 473
           R W  G+  + AT RSTG    +  H P   + CP
Sbjct: 484 RSWRTGRPSSTATSRSTGDATAVSAHRPHTRARCP 518


>03_02_0525 -
           9138107-9138237,9138327-9139301,9139379-9139507,
           9139623-9139867,9139986-9140137,9140236-9140346
          Length = 580

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 562 GGKAFAAATMRSTGFLVCLMPHNPRASLCPRYFT*NVNGRSST 434
           G +  A   +  T  L+ L+P  P A    RY+T NV  ++ T
Sbjct: 2   GARCLALLLLYGTLLLLLLLPQLPLAGAATRYYTFNVKLQNVT 44


>01_05_0297 -
           20578031-20578080,20578162-20578236,20578317-20578416,
           20578476-20578535,20578833-20578907,20578989-20579069,
           20579596-20579665,20579769-20579833,20580008-20580116,
           20580812-20580876,20580964-20581023,20582008-20582134,
           20582215-20582315,20583209-20583316,20583429-20583464,
           20583569-20583714,20585555-20585564
          Length = 445

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 411 AENEGPVTVDDLPLTFQVKYLGQSDARGLWGIKHT 515
           A  +GPV V+DLP   QV  LG S   GL+ + +T
Sbjct: 80  APEKGPVFVEDLPEEEQVVALGHS--AGLYNLGNT 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,142
Number of Sequences: 37544
Number of extensions: 301838
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)