Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k21
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    31   0.85 
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 416 LSHFPRKIHITRYRVVLKISDIFFIDKQFRFEPQLLDPSRVVK 288
           L  FP KI ITRYR+V  + D   + +Q++ +  L   SR+ K
Sbjct: 47  LGKFPGKIVITRYRMVFLVGDGGKMYEQWKLDIPLGQVSRIEK 89


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 502 PHNPRASLCPRYFT*NVNGRS 440
           PH+P A+ CP YF  N+ G +
Sbjct: 23  PHSPAATECPAYFNGNIAGNA 43


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 333  LLVNKKDV-RDL*DNPISSYVNFTWKMAENEGPVTVDD 443
            +L N+KD+ +DL +  I  + +FT KM E+E P++  D
Sbjct: 3505 ILKNRKDLPKDLINTGILPFEDFTGKMNESEFPLSNGD 3542


>AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical
           protein F39E9.11 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 381 SSYVNFTWKMAENE-GPVTVDDLPLTFQVKY 470
           +S +NFTWK   +E G   +D++  T  VK+
Sbjct: 58  NSQINFTWKFEYDEAGNEDIDEIAGTIDVKF 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,214,148
Number of Sequences: 27780
Number of extensions: 260766
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)