Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k21
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.4  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 483 RSVQGTSPETSMVDHLPSQDLRSQPFST*NSHNS 382
           R +    P T+MV HLP Q L S+       H+S
Sbjct: 99  RKLPPLHPHTAMVTHLP-QTLTSENVEILLEHSS 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 384 SYVNFTWKMAENEGPVT 434
           S+ +F  KM  N GPVT
Sbjct: 888 SFNHFVLKMGINHGPVT 904


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = -1

Query: 604 SGVIVSFTRGRIWPGGKAFAAATMRSTGFLVCLMPH 497
           SG  +   +G +W      A      +GF+  L  H
Sbjct: 763 SGYGIGLQKGSLWADAVTLAILDFHESGFMESLDNH 798


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 475 PRYFT*NVNGRSSTVTGPSF 416
           PRY T  +NG S T+    F
Sbjct: 233 PRYTTFTINGESFTLQSGIF 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,480
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)