Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k13
         (117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   2.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    24   2.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    22   9.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    22   9.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 1    CMKLKFISYVCHKRNKPQY 57
            C+ L F S V HK ++PQ+
Sbjct: 1376 CLHLLFASLVAHKFDQPQH 1394


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 62  YVNNVIYDIIQTYLN 106
           +++NV+YD++Q  LN
Sbjct: 541 FLHNVVYDVVQQVLN 555


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 53   NTFYVNNVIYDIIQTYL 103
            NT  ++N  YDIIQ+Y+
Sbjct: 1945 NTNSISNNEYDIIQSYV 1961


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 23  VMYVTNAINHNTFYVNN--VIYDIIQTYLNQKK 115
           +M + N I+ N   +N   V+ + +QTYL++K+
Sbjct: 403 IMRLGNKISENNELLNENRVLKEKLQTYLDKKE 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,061
Number of Sequences: 5004
Number of extensions: 3454
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 43080638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)