Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k13
         (117 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   2.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    20   3.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    20   3.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    20   3.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    20   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  MLIMLFMILYRHI*IKKK 116
           +L MLF+ILY  I + KK
Sbjct: 372 ILFMLFIILYWPILLFKK 389


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  VTNAINHNTFYVNNVIYDIIQTYLNQK 112
           + +++++NT + NN  Y+      N+K
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  VTNAINHNTFYVNNVIYDIIQTYLNQK 112
           + +++++NT + NN  Y+      N+K
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  VTNAINHNTFYVNNVIYDIIQTYLNQK 112
           + +++++NT + NN  Y+      N+K
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +2

Query: 32  VTNAINHNTFYVNNVIYDIIQTYLNQK 112
           + +++++NT + NN  Y+      N+K
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYNKK 107


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  VTNAINHNTFYVNNVIYDI 88
           VT+ + +   +VN VIY +
Sbjct: 661 VTSWLGYMNSFVNPVIYTV 679


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,216
Number of Sequences: 438
Number of extensions: 327
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 19
effective length of database: 138,021
effective search space used:  2622399
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)