Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k10
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    29   0.53 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.5  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   8.6  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 230 YRSHFLITVSLLLIKDWTVVGVVYHTPPSPLH*RNRNNSKTNKLYYVTPP 81
           +R   L+ +  L I  W  + +   T  + LH +  + + TN +YYV PP
Sbjct: 36  FRHKVLVIIHKLAISSWNRIPL---TLCNKLHIKRISGALTNAVYYVAPP 82


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 284 IGFIYLLYTNSIGMGPTHYRSHFLITVSLLLIKDWTVVGVVY 159
           +G++  L+  +IG+  + + S  L+T+S LL    +VVGV +
Sbjct: 116 VGWLIFLFI-TIGISASDFFSTNLVTISWLLQLPDSVVGVTF 156


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  VPWGCNVIKFISFTVISVPLVEGAWG 152
           V WG  ++  ++  +I +P V   WG
Sbjct: 495 VAWGSTILGIVACLMIPIPFVLHKWG 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,219
Number of Sequences: 5004
Number of extensions: 44553
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)