Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k10
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0196 - 12898050-12898553,12898689-12900824                       32   0.41 
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178...    28   5.0  

>06_02_0196 - 12898050-12898553,12898689-12900824
          Length = 879

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 378 IKYFVDVEELNTKTFI*IAGQRL--NVF*KNPLNWVYL-FIVHKQYWDGSNPLPVSFFNN 208
           + +FV V  LN  TF+ +AG R+  N F    LN   L  +V  Q +D  + + + F  N
Sbjct: 725 LPHFVSVSNLNNLTFLRLAGSRIDENAF----LNLEGLQQLVKLQLYDAYDGMNIYFHEN 780

Query: 207 SFP 199
           SFP
Sbjct: 781 SFP 783


>03_03_0277 +
           16116017-16117424,16117461-16117660,16117739-16117816,
           16118381-16118533,16118969-16119280,16119390-16119563,
           16120411-16120498,16120598-16120611
          Length = 808

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 429 YHEFLCNSVPLVRKQHQIKYFVDVEELN 346
           + E +C +  L+R+ H IKY +  E +N
Sbjct: 84  WKELICKTSKLIRRAHMIKYHLPGEPMN 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,894
Number of Sequences: 37544
Number of extensions: 252297
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)