Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k10
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-30|CAI79280.1|  281|Caenorhabditis elegans Hypothetical...    29   1.9  
AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL132860-30|CAI79280.1|  281|Caenorhabditis elegans Hypothetical
           protein Y56A3A.36 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 284 IGFIYLLYTNSIGMGPTHYRSHFLITVSLLLI 189
           I  I+  Y +SIG   T +R  F +TVSL+ I
Sbjct: 90  ISVIFCAYVSSIGRSSTVHRKFFHLTVSLIYI 121


>AL117206-8|CAB60449.2|  328|Caenorhabditis elegans Hypothetical
           protein Y67A10A.8 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 293 TH*IGFIYLLY----TNSIGMGP--THYRSHFLITVSLLLIKDWTVVGVVYHT 153
           +H +GFIY  Y    TN I +    +H   HF+ T+S+  ++   ++   YHT
Sbjct: 68  SHLLGFIYFTYQQYNTNYIVLPSIGSHPSDHFVFTLSIFGMQMCMLLSASYHT 120


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 420  FLCNSVPLVRKQHQIKYFVDVEELNTKTFI*IA 322
            F+  S+P+V    QI+  +DV + N+   + IA
Sbjct: 1265 FMVTSIPIVLNSDQIELLIDVSQCNSNVQVGIA 1297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,705
Number of Sequences: 27780
Number of extensions: 243316
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)