Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8k10
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.062
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           28   0.062
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.062
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 GIKYKNVHINCWTAIKCVLKKPIKLGLFIYC 263
           GI      +NCWT  +  L+K  ++G F+ C
Sbjct: 231 GISISGTALNCWTQTENSLEKAKQVGAFMGC 261


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 GIKYKNVHINCWTAIKCVLKKPIKLGLFIYC 263
           GI      +NCWT  +  L+K  ++G F+ C
Sbjct: 102 GISISGTALNCWTQTENSLEKAKQVGAFMGC 132


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 GIKYKNVHINCWTAIKCVLKKPIKLGLFIYC 263
           GI      +NCWT  +  L+K  ++G F+ C
Sbjct: 231 GISISGTALNCWTQTENSLEKAKQVGAFMGC 261


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 150 GGVVYDPNHRPVFDQQ*GNCY*KMRPVVGWTHPNTVCVQ 266
           G V  +P+ + ++D    N    +RPVV  +    VC++
Sbjct: 21  GAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIK 59


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 150 GGVVYDPNHRPVFDQQ*GNCY*KMRPVVGWTHPNTVCVQ 266
           G V  +P+ + ++D    N    +RPVV  +    VC++
Sbjct: 21  GAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIK 59


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 162 YDPNHRPVFDQQ*GN 206
           YDPN RP+   Q  N
Sbjct: 55  YDPNVRPISSHQIAN 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,232
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)