Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8k08
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 182 2e-46
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 30 1.4
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 29 2.4
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 4.1
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 29 4.1
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 28 5.5
08_01_0658 - 5682425-5682832,5682878-5683000 28 7.2
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 27 9.6
03_02_0028 - 5118621-5119448 27 9.6
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 182 bits (443), Expect = 2e-46
Identities = 78/133 (58%), Positives = 101/133 (75%)
Frame = +1
Query: 208 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 387
A ++ VK F VYRW+PD P ++P+ Q++ VDL C PMVLD L KIK E D TL F
Sbjct: 371 AAASPAPSTVKEFRVYRWSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAF 430
Query: 388 RRSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQ 567
RRSCREG+CGSC+M IDGVNT+AC+ +D + S T + PLPHMYVV+DLV DLT+FY+Q
Sbjct: 431 RRSCREGICGSCSMCIDGVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQ 490
Query: 568 YQSIEPWLQRENE 606
Y+S+EPWL+R+ +
Sbjct: 491 YKSVEPWLKRKTK 503
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 437 TASTLWPASAISIKTFPSRRRFILYLTCTSSKTWSPI*PTFTGSTSLSSRGCSVKMKLLK 616
+ ST PA+A + T RRR + + +SS + SP+ P T+ SR + + ++
Sbjct: 34 SVSTASPAAAAAATTHRPRRRELEAASSSSSSSSSPLRPL---KTAFPSRRSPLAVSSIR 90
Query: 617 VRRLNCS 637
RR N S
Sbjct: 91 FRRRNSS 97
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 292 TQNFEVDLDDCAPMVLDALLKIKNEVDPTLTFRRSCREGVCGS 420
T +D + C + ALL+++ ++D L R+ R VCG+
Sbjct: 740 TVRMSIDCNGCYQRIRRALLQMQEDLDSHLIDRKQQRVSVCGA 782
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 443 TPSIFIAQEPQTPSRHERLKV-RVGSTSFLIFSKASNTIGAQSSKSTSKFCV*GFLSG 273
T S F+++ PQTPS+H V R+ + F K + +S S + F+SG
Sbjct: 357 TSSYFVSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSG 414
>02_02_0188 +
7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 250 VYRWNPDEPDKKPYTQNFEVDLDDCA 327
VYRW D KP VDLDDCA
Sbjct: 308 VYRW--DGTSWKPQADVLHVDLDDCA 331
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 352 KIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQN 480
K+K+E+D + VC +C +N L +SHID N
Sbjct: 148 KLKDELDGNYMIQNY----VCPNCERRYSSLNALDLVSHIDNN 186
>08_01_0658 - 5682425-5682832,5682878-5683000
Length = 176
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 414 WFLCDEYRRRQHSGLHQPYRSKHFQADEDLSSTSHVRRQRLGPRS 548
W L E R R H+ + S+ F+ +ED +T+ R RS
Sbjct: 32 WRLATEARGRPHAAVGPSRSSREFEVEEDDDATTASRSSASSTRS 76
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 472 DQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRE-NEAVK 615
D ++ + TK+YPL ++ + VPD ++Y W +E E VK
Sbjct: 128 DGSLMEITKVYPLDAVFDSPEDVPDDVKANKRYAGSSNWTVKEVAETVK 176
>03_02_0028 - 5118621-5119448
Length = 275
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 331 MVLDALLKIKNEVDPTLTFRRSCREGVCGSCAMNIDGVNTL 453
+V + +K DP FRRS E V G + DG+ L
Sbjct: 179 VVAGSFAVVKRSDDPRADFRRSMAEMVVGRAIYDADGLERL 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,771
Number of Sequences: 37544
Number of extensions: 360177
Number of successful extensions: 886
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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