Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8k04
(627 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 1.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.8
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.4 bits (48), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 32 LLYISGTS*NNLKKNYQRDRPRDLRVNINIVKFGL 136
L I G NN K Y +L N+N V G+
Sbjct: 33 LFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGV 67
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 444 IDTRTLRSTHGTKINTRIC 388
ID R++ S HG ++ R C
Sbjct: 375 IDKRSMGSHHGQRVMVRTC 393
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 201 LIVPCVLISSMALLGFTLP 219
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 269 LIVPCVLISSMALLGFTLP 287
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 269 LIVPCVLISSMALLGFTLP 287
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 404 ILVPCVLLKVRVSIAFNAP 460
++VPCVL+ + F P
Sbjct: 238 LIVPCVLIASMAVLGFTLP 256
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 67 KKKLSEGPPSRPPCQYKY 120
++KLS P +PP Q Y
Sbjct: 811 REKLSSSQPMQPPQQNPY 828
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,601
Number of Sequences: 438
Number of extensions: 2688
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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