Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j24
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    30   0.28 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   1.5  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   1.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   3.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   3.4  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   6.0  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 391 LFLKADNKPMRTALERSKNK*TRSLSSVTLDICNSQPL 278
           LFL AD    R ++ERSKN  T   S   +D  N+Q L
Sbjct: 722 LFLVADRVSTRVSIERSKNMCTIIRSQWVMDSVNNQRL 759


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 187 GFGVFGKLMSPWVFRL-SECFFTSKHPFGFFL 95
           GF ++  LMSPW+ R  S C F     F  F+
Sbjct: 556 GFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFV 587


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 285 WELQISKVTEDKERVYLFLDRS 350
           +EL +SK+ E K  +YL LDR+
Sbjct: 231 YELYLSKMEEAKSTIYLLLDRN 252


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 404  DKNKCDCFYCINRSCL 451
            D +K    YC+N+SCL
Sbjct: 1044 DSSKASAVYCVNKSCL 1059


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 345 RSSAVRIGLLSALRNNNFISTRINVTVSTVSIDPACENTDCLTSLR--VEYVKKTLANL 515
           +  A+   LL++LR    +   +  T+S +S+DP+   +DC   LR  V +  K LA +
Sbjct: 512 KQKALDATLLNSLRYRLTLYIML-YTLSQISLDPSYLTSDCKAVLRNFVSFTYKELAEV 569


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 306 VTEDKERVYLFLDRSSAVRIGLLSALRNN 392
           +T+       +LDR+S+ ++GL+SA  +N
Sbjct: 149 ITDPTHGFVQYLDRNSSAKLGLISANSSN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,839
Number of Sequences: 5004
Number of extensions: 46189
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)