Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j24
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978...    32   0.38 
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90...    30   1.5  
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148...    27   8.1  
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683...    27   8.1  

>03_02_0603 -
           9786761-9786856,9787189-9787269,9787366-9787431,
           9788056-9788610,9788693-9788857,9789110-9789217,
           9789905-9790109,9790347-9790434,9791590-9792109
          Length = 627

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 348 SSAVRIGLLSALRNNNFISTRINVTVSTVSIDPACENTDCLTSLRV 485
           SS  R G + ALR    +  ++NVT  TV+I    EN D   +L +
Sbjct: 538 SSQNRDGAIQALRRMQRVGMKLNVTAYTVAIKACVENKDLKLALHL 583


>10_01_0070 +
           902999-903354,904354-904600,904718-904897,905087-905332
          Length = 342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 342 DRSSAVRIGLLSALRNNNFISTRINVTVSTVSIDPACE----NTDCLTSLRVEYVKKTLA 509
           D     R+GL  A+  +NF   ++N  +S  +I PA      N  C  +   E+ K+   
Sbjct: 163 DMEECQRLGLTKAIGVSNFTCKKLNTLLSFATIPPAANQVEINPYCRQNKLREFCKEKEI 222

Query: 510 NLCS 521
            LC+
Sbjct: 223 QLCA 226


>06_03_0293 +
           19212963-19212965,19213900-19214235,19214658-19214870,
           19216134-19216408,19216504-19216615,19217181-19217417,
           19217445-19217462
          Length = 397

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 172 GKLMSPW--VFRLSECFFTSKHPFGFFLPVMNKN 77
           G  +  W  +F LS  F  S  P  F++PV+N+N
Sbjct: 2   GPFLQSWNKIFVLSCIFAVSVDPLFFYIPVINEN 35


>04_04_0664 -
           27066253-27067155,27067242-27067508,27067707-27068368,
           27068479-27069047,27070011-27070108
          Length = 832

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 172 GKLMSPWVFRLSECFFTSKHPFGFFLPVM 86
           G    PW+F ++   F   HPF    P +
Sbjct: 8   GSFPPPWIFSIANSLFQLDHPFRLIRPFL 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,088
Number of Sequences: 37544
Number of extensions: 237302
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)