Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j24
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-8|CAA77583.2|  489|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY547284-1|AAS49906.1|  489|Caenorhabditis elegans SOCS-box prot...    30   1.4  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    28   4.1  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    28   4.1  

>Z11505-8|CAA77583.2|  489|Caenorhabditis elegans Hypothetical
           protein F59B2.6 protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 411 INVTVSTVSIDPACENTDCLTSLRVEYVKKTLANLCSV 524
           I V   +V IDP+     C   ++ E  K+T  NLC++
Sbjct: 448 IQVLKESVEIDPSYYRIKCCLKMQEELEKETAENLCTI 485


>AY547284-1|AAS49906.1|  489|Caenorhabditis elegans SOCS-box protein
           ZIF-1 protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 411 INVTVSTVSIDPACENTDCLTSLRVEYVKKTLANLCSV 524
           I V   +V IDP+     C   ++ E  K+T  NLC++
Sbjct: 448 IQVLKESVEIDPSYYRIKCCLKMQEELEKETAENLCTI 485


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 487  STRNEVKQSVFSQAGSIDTVETVTFILVDMKLLFLKADNK 368
            STRN     +    GSI T  +VT  LVD K   +K + K
Sbjct: 1974 STRNSTLSLINKPGGSIGTGSSVTSTLVDSKSENMKIEKK 2013


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 487  STRNEVKQSVFSQAGSIDTVETVTFILVDMKLLFLKADNK 368
            STRN     +    GSI T  +VT  LVD K   +K + K
Sbjct: 1974 STRNSTLSLINKPGGSIGTGSSVTSTLVDSKSENMKIEKK 2013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,588,915
Number of Sequences: 27780
Number of extensions: 252267
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)