Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j19
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    30   0.23 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   3.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   6.5  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.6  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 524 VLVRIYGNKTDLLIDRKAEVRNIKTLS 604
           +L+RIYG   +L I+R+ E+ N+K L+
Sbjct: 90  LLLRIYGPHVELFINRQVELENLKRLA 116


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 127  NLILRITRQLIES-KSILRFTNYNSKNSEPIRELLLYRRF 11
            N+  R  R++++S    +R      KN++P+R  LL+R++
Sbjct: 1066 NMYARFARKMMDSIDDSIRDEGVLDKNNQPVRGGLLFRKY 1105


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 328 LPFSW*YLYSNSNSGKRYLWWDKPTSKKPKTYM 426
           +P+   +L     S +RY  WDK T   PK  +
Sbjct: 403 MPYDTIWLDIEYASKRRYFTWDKATFPNPKAML 435


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 500 TSHNENDIVLVRIYGNKTDLLI 565
           TSH +N ++L R+Y    +L I
Sbjct: 321 TSHPDNSLILQRLYSTNNELRI 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,521
Number of Sequences: 5004
Number of extensions: 41762
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)