Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j19
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58734-3|AAO91673.1|  326|Caenorhabditis elegans Choline kinase ...    49   3e-06
U58734-2|AAB52502.1|  342|Caenorhabditis elegans Choline kinase ...    49   3e-06
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    31   0.86 
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    31   0.86 
Z98866-15|CAB11554.2|  335|Caenorhabditis elegans Hypothetical p...    29   2.0  
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U58734-3|AAO91673.1|  326|Caenorhabditis elegans Choline kinase c
           protein 1, isoformb protein.
          Length = 326

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 371 ESDIYGGINLLLKNLRPTWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 550
           ++D       +L  LRP W    + F+ F+ GITNK+      T H     V+ R++G+ 
Sbjct: 18  QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72

Query: 551 TDLLIDRKAEVRNIKTLS 604
           T+ +IDR+ EV   K L+
Sbjct: 73  TNKVIDRENEVIAWKQLA 90


>U58734-2|AAB52502.1|  342|Caenorhabditis elegans Choline kinase c
           protein 1, isoforma protein.
          Length = 342

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 371 ESDIYGGINLLLKNLRPTWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 550
           ++D       +L  LRP W    + F+ F+ GITNK+      T H     V+ R++G+ 
Sbjct: 18  QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72

Query: 551 TDLLIDRKAEVRNIKTLS 604
           T+ +IDR+ EV   K L+
Sbjct: 73  TNKVIDRENEVIAWKQLA 90


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 422 TWPLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 547
           T PLE+++      G++N L  C+LS  +    NE + VL+R+Y N
Sbjct: 49  TVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 94


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 422 TWPLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 547
           T PLE+++      G++N L  C+LS  +    NE + VL+R+Y N
Sbjct: 70  TVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 115


>Z98866-15|CAB11554.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.18 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 413 GFLEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 297
           G L+  +   KY++PE+EL    H L G +++   +YV+
Sbjct: 178 GGLQQEIRRLKYQYPEYELWVTGHSLGGAIASIAASYVV 216


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 407 LEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 297
           L+  +   KY++P++EL    H L G L++   +YV+
Sbjct: 347 LQQDIRQLKYKYPDYELWVTGHSLGGALASVAASYVV 383


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 413 GFLEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 297
           G LE  + + KYR+P++E+    H L   L++   ++V+
Sbjct: 178 GGLEAEMRNLKYRYPDYEVWVTGHSLGAALASVGASWVV 216


>AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical
           protein C39B5.5 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 407 LEVGLSHHKYRFPEFELEYKYHQLKGKLSTC*RNYVI 297
           L+  +   KY++P++EL    H L G +++   +YV+
Sbjct: 291 LQQDIRQLKYKYPDYELWVVGHSLGGAIASVAASYVV 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,200
Number of Sequences: 27780
Number of extensions: 217442
Number of successful extensions: 498
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)