Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j19
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 349 LYSNSNSGKRYLWWDK 396
           +Y + N  +++LWW K
Sbjct: 71  MYKDKNVVQKFLWWYK 86


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 349 LYSNSNSGKRYLWWDK 396
           +Y + N  +++LWW K
Sbjct: 71  MYKDKNVVQKFLWWYK 86


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 467 ITNKLVCCQLSTSHNENDIVLVRI 538
           +T ++  C L    NEND  L R+
Sbjct: 126 LTQRINSCDLLKKRNENDPFLKRL 149


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 467 ITNKLVCCQLSTSHNENDIVLVRIYGNKTDLLIDRKAEVRNIK 595
           +T ++  C L    NEND  L      K  +  D K  V NIK
Sbjct: 5   LTQRINSCDLLKKRNENDPFL------KRPITGDEKWVVNNIK 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,826
Number of Sequences: 438
Number of extensions: 3096
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)