Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j13
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0545 + 9373344-9374963                                           29   3.3  
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    29   4.4  
08_02_0254 - 14879724-14880635                                         28   7.7  

>03_02_0545 + 9373344-9374963
          Length = 539

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 426 GPARLGHPGLSFSAPPGYLRPTTRDSHHYVHRSFPRNL 539
           G +RLG P   FSA  G++R       HY   S P+ L
Sbjct: 218 GHSRLGEPQFPFSAEKGFVRSHRMQRKHYRGLSNPQCL 255


>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 536 VAWKRAMDVMVTVACGRSKVSRWCRER 456
           ++W++  D++V VA G   +  WC  R
Sbjct: 444 ISWEKLYDILVGVAQGLDYLHHWCNHR 470


>08_02_0254 - 14879724-14880635
          Length = 303

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 536 VAWKRAMDVMVTVACGRSKVSRWCRER 456
           ++W++  +++V +A G   + RWC  R
Sbjct: 100 LSWEKLYEILVGIAQGLDYLHRWCNHR 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,668,053
Number of Sequences: 37544
Number of extensions: 309173
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)