Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j13
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    31   0.56 
U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    29   3.0  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   5.2  
Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 469 HLDTFDLPHATVTITSIARFHATFANYETK-NILNGRSEYNFYXQHEHL 612
           H   F  P+A V+ +S  + H  FAN  T  N+ N +S  NF    +H+
Sbjct: 107 HESPFSHPNADVSPSSPQQLHLAFANATTSTNVTNAKSTTNFDGYLKHI 155


>U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical
           protein F47C12.4 protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +1

Query: 394 VKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATFANYETKN---- 561
           +K Y+Y+      PD D     ++   +T+ L  + + ++ I + +    N +T      
Sbjct: 279 LKPYMYTKESHFFPDPDSMEQLAKLEPETYSLMRSPL-VSEIDQSYRNRHNCQTPGAHYE 337

Query: 562 -ILNGRSEYNFYXQHEHLLNEPT 627
            +L G+   NF  +H+ +  +PT
Sbjct: 338 VVLGGKKTANFVVEHDKIKGKPT 360


>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 449 RAIVLGTTWIPSTYHTRQSPLRPSLVST 532
           RA++LG T++P ++H R    +P +  T
Sbjct: 146 RAVILGVTFLPPSFHNRDEICQPQVNRT 173


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = +1

Query: 394 VKAYLYSDSMLVLPDLDIQGYRSRHHLDTFDLPHATVTITSIARFHATF-----ANYETK 558
           +K Y+YS      PD D     ++   + + L  + +   S+ R+         +N   +
Sbjct: 280 LKPYMYSKESQFFPDPDSMEQLAKLEPEAYSLMRSPLVSNSVERYRTNRYCQAPSNPHYE 339

Query: 559 NILNGRSEYNFYXQHEHLLNEPT 627
            +L G+   NF  +   +  +PT
Sbjct: 340 VVLGGKKTANFVVEENKIKGKPT 362


>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 IVLGTTWIPSTYHTRQSPL-RPSLVSTQPSLITRLRISSTEEV 580
           I+  TT +P+T  T Q+PL   ++++T+P+L T+  + +T+ V
Sbjct: 468 IIGSTTTLPTTT-TTQTPLPTTTILTTRPALTTQSTVFTTQAV 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,651
Number of Sequences: 27780
Number of extensions: 252656
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)