Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j11
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    66   4e-12
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    44   2e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    35   0.010
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.6  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   4.8  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   6.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.4  

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
 Frame = +2

Query: 173  IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLKSKDIYRTEPDKIKFQQLRKLF 349
            IFG+PL ++V  S   +D+GLP+VV   I+YL++    K + IYR        + L++ F
Sbjct: 1062 IFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEKEEGIYRLSGSASTIKHLKEQF 1121

Query: 350  TDRGPTFPY-----HWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQRE-AT 511
             + G  +        +DV V   +LK ++  LP ++L   +H  FE    +         
Sbjct: 1122 NE-GVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNVPNDSAALGE 1180

Query: 512  MTNLINKLPNCNHNLLAWLMRHFQHVVS 595
            + ++I+KLP  N  LL  L+ H + +++
Sbjct: 1181 LCDVISKLPPENFALLDSLLHHLRRIIA 1208


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
 Frame = +2

Query: 176  FGVPLQQSVERSRCHDDTG-------LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 334
            FGVPL+  VER+      G       +P  + +++  ++   +    ++R   +  + ++
Sbjct: 835  FGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLKE 894

Query: 335  LRKLFTDRGPTFPYHWDVPV-ACAMLKAFISELPESILTQELHGQFEQATAI-AEPQREA 508
            L  +      +  Y  + P+   A+LK F+ ELP+ +LT +L G F  ++ + +E +R  
Sbjct: 895  LSDMLDVSPDSIDYEQETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMR 954

Query: 509  TMTNLINKLP 538
             +   I  LP
Sbjct: 955  VLHLTICLLP 964


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
 Frame = +2

Query: 194  QSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFP 373
            +S+E     + + LP V+   +  + AHGL+ + IYR      + + L   F +      
Sbjct: 780  RSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVDEFENGSIRME 839

Query: 374  YHWDVPVAC-AMLKAFISELPESILTQELHGQFEQATAI-AEPQREATMTNLINKLPNCN 547
            +      AC ++LK ++  LPE ++    + +  +A  I  E ++   +  ++  L   +
Sbjct: 840  HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAH 899

Query: 548  HNLLAWLMRHFQHV 589
             ++  +L+ H   V
Sbjct: 900  LSVFRFLIAHLGRV 913


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 246  TTSGRPVSSWQRERSTDCCSGTPNIGSATXNKNPLAKGFIVSTVMLIKQNNKTKHRHY 73
            TTS    S +    +T+  S T    S+T   NP+ +G   ST   ++Q N +   +Y
Sbjct: 1460 TTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSGTSTWSTVRQWNGSATYNY 1517


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 221 DDTGLPLVVR-DSIDYLQAHGLKSKDI--YRTEPDKIKFQQL 337
           +DT LP   +   +DY +A  + +K+I  +R   DK+KFQQL
Sbjct: 86  EDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQL 127


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 281 LKSKDIYRTEPDKIKFQQLRK---LFTDRGPTFPYHWDVPVACAM---LKAFISELPESI 442
           L  +D+YRT PD + F+   K     +D         DVP+   +   L  F + LPE+ 
Sbjct: 344 LIERDLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYLPENG 403

Query: 443 LTQELH 460
             Q L+
Sbjct: 404 YCQSLN 409


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 416 FISELPESILTQELHGQFEQATAIAEPQ 499
           F+S+L   + ++EL+  FEQA  + + Q
Sbjct: 243 FVSQLANRLTSRELYDFFEQAGPVRDAQ 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,132
Number of Sequences: 5004
Number of extensions: 43304
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)