Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j11
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561...    66   2e-11
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     28   4.9  
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098...    28   4.9  
11_01_0477 - 3688357-3690042                                           28   6.5  
02_03_0091 + 15112390-15112396,15113469-15113962                       28   6.5  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    27   8.6  

>07_03_0413 +
           17854787-17854847,17855362-17855606,17856127-17856189,
           17856276-17856294,17856547-17856645,17856725-17856802,
           17856891-17857135,17857796-17857952,17858161-17858303
          Length = 369

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
 Frame = +2

Query: 173 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 352
           +FGVP++ +V+R +      +PLV+    DYL   GL ++ ++++E +K   QQL  L+ 
Sbjct: 130 VFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQLVSLYN 187

Query: 353 -DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIN 529
            D G  FP   +     A++K +++ +PE + T  L+ +   A         A + N++ 
Sbjct: 188 EDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDELRDARVSI-----ADLRNILK 242

Query: 530 KLPNCNHNLLAWL 568
           KLPN N+  L ++
Sbjct: 243 KLPNVNYMTLEFV 255


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
 Frame = +2

Query: 233 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFP---YHWD------ 385
           LP+ + D++ YL+   L+   I +     ++ Q +++L  +R   FP    H        
Sbjct: 611 LPMQI-DNLRYLETLDLRGCAIEKLPASTVRLQNMQRLLVNRSVKFPDEIGHMQALQTLL 669

Query: 386 -VPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREAT--MTNLINKLPN 541
            V ++C  +K F+ EL + I  + L+  F +   + +  R+ T  + + +N+L N
Sbjct: 670 FVSMSCNSIK-FVEELSKLIKMRVLNITFSKPVDMVDEVRKYTDSLVSSLNELFN 723


>04_04_1438 -
           33609242-33609349,33609571-33609663,33609840-33609884,
           33610000-33610055,33610362-33610468,33610605-33610806,
           33611068-33611122,33611129-33611167,33611664-33611725,
           33611875-33611988,33612618-33612627,33612750-33612835,
           33613008-33613377
          Length = 448

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 290 SILIRVPVSNRCCLGRPAVDRCRHGNESAPQTVA 189
           S ++R P   R C G P+V R    + S+PQ  A
Sbjct: 26  SSILRAPNRGRLCPGSPSVLRASSSSPSSPQPTA 59


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 290 SILIRVPVSNRCCLGRPAVDRCRHGN 213
           ++L  V VS RCC GR    +C H +
Sbjct: 294 TVLKLVDVSPRCCCGRRGATQCDHSS 319


>02_03_0091 + 15112390-15112396,15113469-15113962
          Length = 166

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 185 PLQQSVERSRCHDDTGLPLVVRDSI 259
           PL   +  +  HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 239  LVVRDSIDYLQAHGLKSKDIY-RTEP---DKIKFQQLRKLFTDRGPTFPYHWDVPVACAM 406
            LV R     L+A G  ++ I  R+ P   ++++ +  R +  DR P FPY W+  +  ++
Sbjct: 3103 LVARPMASILEATGRTAQSIRNRSNPHESNRLRVRFPRPVARDR-PLFPYSWEEAIGISL 3161

Query: 407  L 409
            L
Sbjct: 3162 L 3162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,529
Number of Sequences: 37544
Number of extensions: 278050
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)