Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8j04
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 144 6e-35
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 28 4.8
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 28 4.8
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 28 4.8
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 28 4.8
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 28 4.8
AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical ... 28 6.3
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 27 8.3
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 27 8.3
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 27 8.3
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 144 bits (348), Expect = 6e-35
Identities = 65/164 (39%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Frame = +2
Query: 80 FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 259
FP FK A+A+YQ+EGA +++ +G S WD + +P I+D ++ D++CD ++ D
Sbjct: 7 FPKNFKLATATAAYQIEGAKDLNGRGFSTWDA-IRLEPGRILDNSDPDLSCDGLLKYKED 65
Query: 260 IEMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWD 439
+ + E+G+ YRFS+SW R++P G + I+E+G K+Y +L L + IEP+VT+FH+D
Sbjct: 66 VALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHFD 125
Query: 440 LPQSLQDLG-GWMNPLIVDWFEDYARVVFSLFADRVKTWVSINE 568
+P ++ D G W+N + FE +A + F F D VKTW++ NE
Sbjct: 126 MPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNE 169
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 142 bits (343), Expect = 2e-34
Identities = 64/164 (39%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Frame = +2
Query: 80 FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 259
FP F+ A+A+YQ+EGA N+ +G S WD + ++ I D ++ D++C+ ++ D
Sbjct: 7 FPKNFQLATATAAYQIEGAKNLDGRGFSTWDS-IRSENGRIHDNSDPDLSCEGRLKYKED 65
Query: 260 IEMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWD 439
+ + +++G+ YRFS+SW R++P G I+EDG ++Y ++ L D GIEP+VT+FH+D
Sbjct: 66 VALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHFD 125
Query: 440 LPQSLQDLG-GWMNPLIVDWFEDYARVVFSLFADRVKTWVSINE 568
+P S+ D G W+N + FE +A + F F D VKTW++ NE
Sbjct: 126 MPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNE 169
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 616 RSHSASVINIVANRYRLVYRDPGFNSIRE-QREHDPSVVLKPVDYQR 479
RS +NI+ + Y RDPG+ ++ ++H+ +VL+ D QR
Sbjct: 553 RSTWTETLNIMGDDYESCIRDPGYKKLQMLVKKHESGIVLEE-DEQR 598
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 398 DKGIEPLVTIFHWDLPQSLQDLGGWMNPLIVDWFEDYARVVFSLFADRVKTWVSINE 568
++GI P F + + L+ LG W + + E Y V + L +DR + +N+
Sbjct: 345 EEGIIPRAAAFLFAESRKLESLG-WKFDFSLSFLEVYNNVAYDLLSDRAVVQLRLND 400
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 616 RSHSASVINIVANRYRLVYRDPGFNSIRE-QREHDPSVVLKPVDYQR 479
RS +NI+ + Y RDPG+ ++ ++H+ +VL+ D QR
Sbjct: 574 RSTWTETLNIMGDDYESCIRDPGYKKLQMLVKKHESGIVLEE-DEQR 619
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 616 RSHSASVINIVANRYRLVYRDPGFNSIRE-QREHDPSVVLKPVDYQR 479
RS +NI+ + Y RDPG+ ++ ++H+ +VL+ D QR
Sbjct: 553 RSTWTETLNIMGDDYESCIRDPGYKKLQMLVKKHESGIVLEE-DEQR 598
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 398 DKGIEPLVTIFHWDLPQSLQDLGGWMNPLIVDWFEDYARVVFSLFADRVKTWVSINE 568
++GI P F + + L+ LG W + + E Y V + L +DR + +N+
Sbjct: 345 EEGIIPRAAAFLFAESRKLESLG-WKFDFSLSFLEVYNNVAYDLLSDRAVVQLRLND 400
>AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical
protein R09E12.3 protein.
Length = 320
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 565 VYRDPGFNSIREQREHDPSVVLKPVDYQRIHPATKILQTLG*IPMK 428
+ RDPG I EQ +DP V + + I L+ G I M+
Sbjct: 275 ILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKLRDAGVIQMR 320
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
E+ EL H + SL W TG ++ + G NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
E+ EL H + SL W TG ++ + G NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
E+ EL H + SL W TG ++ + G NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
E+ EL H + SL W TG ++ + G NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,868,633
Number of Sequences: 27780
Number of extensions: 315165
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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