Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8j02
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    29   3.2  
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    27   7.5  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 304 TRKVDRTRKVDRTHRVEVTRKVELTL-----QEERIPRVEHTRRADMRPLSLASNLHMAA 468
           +++V  T+      +VE  +K E TL     +EER  +VE  + A ++    ASN+  AA
Sbjct: 718 SKEVKHTKTAPWAAKVEAPQKSEKTLLEIQKEEERKFKVEQEKNAKLKAKEQASNITSAA 777

Query: 469 LVTVNRA 489
            +  +++
Sbjct: 778 AIAGDKS 784


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 324 GTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFP 220
           G V++AGTP P GT  +      R+L G +S   P
Sbjct: 651 GNVNVAGTPAPTGTPAVAPAAPRRDLPGAASAATP 685


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 519 DGEVKGFDFTEKSIRRAFIRKVY 587
           DG+   F F++K++R AF+RKV+
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVF 88


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 519 DGEVKGFDFTEKSIRRAFIRKVY 587
           DG+   F F++K++R AF+RKV+
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVF 88


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/75 (18%), Positives = 35/75 (46%)
 Frame = +1

Query: 307 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 486
           +K+D  +K +  HR +  R+ +    +E+  + +   + + + L            ++ R
Sbjct: 19  KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 78

Query: 487 AISHRTTQSAKMAKS 531
            +S ++  +AK AK+
Sbjct: 79  KLSEKSEPAAKKAKA 93


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/75 (18%), Positives = 35/75 (46%)
 Frame = +1

Query: 307 RKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNR 486
           +K+D  +K +  HR +  R+ +    +E+  + +   + + + L            ++ R
Sbjct: 66  KKLDEKKKTEEKHRAKQERQAQKKGAKEQAKKEKAELKKEAKELLKKEKAEERKKESLKR 125

Query: 487 AISHRTTQSAKMAKS 531
            +S ++  +AK AK+
Sbjct: 126 KLSEKSEPAAKKAKA 140


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 247 QITRACIRIKADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPR 402
           Q+ +  + ++    +R  + R+  + +K+DR HR    RK+   L+E R+ R
Sbjct: 756 QLRKGALNMEQKERMRELKKRRRMKKQKIDRLHR---NRKIGQILREWRVVR 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,196
Number of Sequences: 27780
Number of extensions: 253435
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)