Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i24
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    31   0.41 
03_02_0715 + 10621789-10623243,10624074-10625018                       29   2.9  
08_02_1598 + 28130385-28130881,28130957-28131269                       27   6.7  
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    27   6.7  

>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 112 EWNVQETRCGCCRWRFGGITRSIIFGEERTSRSPV-RISRRHKKY 243
           EW+  E+RC  C+ RF  IT+S +      SR  V R+ +R + Y
Sbjct: 399 EWSKVESRCPLCKRRFTTITKSSMADLGLGSRKAVIRVEKRDQVY 443


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 112 EWNVQETRCGCCRWRFGGITRSI--IFGEERTSRSPVRISRRHKKY 243
           +W+  E+RC  C+ RF  IT+S     G E T+ S +R+  R + Y
Sbjct: 443 QWSKVESRCPLCKRRFTTITKSSKEDTGLELTN-SVIRVEERDQVY 487


>08_02_1598 + 28130385-28130881,28130957-28131269
          Length = 269

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 145 CRWRFGGITRSIIF--GEERTSRSPVRISRRHKKYSTGP 255
           C W  G +  +++F         +P ++ R H K++ GP
Sbjct: 3   CTWALGRVVLAVVFLVALAAGDAAPPKVHRNHGKFTAGP 41


>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 344 GIPMKGRNIHRIDGSTYIIPYD 409
           G+  KG+ + R+DGST+++  D
Sbjct: 70  GLAFKGKGVCRVDGSTFVLLCD 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,102
Number of Sequences: 37544
Number of extensions: 290192
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)