Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i22
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           32   0.29 
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     29   1.6  
12_01_0378 - 2946916-2947590                                           27   8.4  
07_01_1073 + 9566727-9566963,9566992-9567180                           27   8.4  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   8.4  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   8.4  

>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -3

Query: 370 HKLNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSYQFVH 227
           ++L G  GED++ LNWET     LGA      G+ H +H   + +FVH
Sbjct: 455 NELIGKRGEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 113 DILEEQLYNSIVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 286
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+   +     +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294

Query: 287 LQGSKDIVRDCFP 325
            + +  +++  FP
Sbjct: 295 SKSAWQVIQCAFP 307


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 23  GYNAPKMKPVIVILCLFVASLYAADSDVPNDILEEQLYNSIVVADYD 163
           G +   ++P +++L    ASL AA++ VP    + ++  ++V  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>07_01_1073 + 9566727-9566963,9566992-9567180
          Length = 141

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 152 QRRCYCKAAPPEC 114
           QRRC C+ +PP C
Sbjct: 102 QRRCRCRGSPPRC 114


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 120 WRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPINF----G 287
           W + FT+ +S P T   +  A   T R    ++    T  Y  +  T    P+N     G
Sbjct: 41  WITRFTLQASPPATAA-IPAAVAATTRAGVPAAPPHPT--YSISCSTPPRPPLNLSGGGG 97

Query: 288 SRAPRTSSVIVSQLSSDLSSPK-TPLSLCTSATVS 389
           +R P+TS  +   LSS  SS + +P     SA+VS
Sbjct: 98  ARTPQTSQTLALALSSSSSSCRSSPDPATASASVS 132


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 264  WSTPINFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTA 419
            WS   N  S A RT+      LS+ +SS +TP+ L     + L +  + FT+
Sbjct: 1236 WSVISNLSSNAKRTTGYEKPILSNLISSTQTPVELTELHEIKLMQLNVPFTS 1287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,294
Number of Sequences: 37544
Number of extensions: 222022
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)