Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8i17
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0619 - 4961588-4962409 50 1e-06
09_01_0032 - 541411-541737,542751-543752 29 2.8
05_07_0219 - 28474661-28475146,28475979-28476644 29 2.8
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 29 3.8
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 3.8
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 28 6.6
11_08_0028 + 27782072-27782171,27782427-27782620 27 8.7
11_08_0013 + 27629086-27629185,27629441-27629634 27 8.7
09_06_0188 - 21441377-21442201 27 8.7
06_03_0368 - 19966741-19967204,19967279-19967450 27 8.7
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 8.7
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 27 8.7
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 8.7
>11_01_0619 - 4961588-4962409
Length = 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +2
Query: 233 RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 349
+CQKC + GHW+YECK +R + RPSRT+ + KN K K+
Sbjct: 95 QCQKCFQPGHWTYECKNERVYISRPSRTQQL-KNPKLKK 132
>09_01_0032 - 541411-541737,542751-543752
Length = 442
Score = 29.1 bits (62), Expect = 2.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 233 RCQKCLEFGHWSYECKGKRK 292
RC+ CL++GH + +CK ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 230 IRCQKCLEFGHWSYECKGKRKI 295
I C++C +FGH++ EC RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 572 HFSCLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSNP 465
H S NR + +HC + SP+ CC + + S +P
Sbjct: 998 HESWTNR-SVNSHCQKRRKLSSPMSCCTYTERSCSP 1032
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 230 IRCQKCLEFGHWSYECKGKRKI 295
I C +C +FGH++ EC RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 224 QGIRCQKCLEFGHWSYECKGKRKILV-RPSR 313
QG+RC C + H + C K+K V RP +
Sbjct: 298 QGVRCASCHKLDHRALACWNKKKAQVWRPKK 328
>11_08_0028 + 27782072-27782171,27782427-27782620
Length = 97
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 563 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSN 468
C++ CQI+ L S HCCC + +N
Sbjct: 53 CMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
>11_08_0013 + 27629086-27629185,27629441-27629634
Length = 97
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 563 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSN 468
C++ CQI+ L S HCCC + +N
Sbjct: 53 CMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
>09_06_0188 - 21441377-21442201
Length = 274
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 233 RCQKCLEFGHWSYEC 277
RC +C E GH SYEC
Sbjct: 166 RCYECGEEGHLSYEC 180
>06_03_0368 - 19966741-19967204,19967279-19967450
Length = 211
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 230 IRCQKCLEFGHWSYECKGKRKI 295
I C +C +FGH++ EC RK+
Sbjct: 171 IECCRCGKFGHFADECDEPRKM 192
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 233 RCQKCLEFGHWSYE-CKGKRKILVRPSRTRIMHKNLKAKEEGQ 358
+C+ C + GHW+ + CK KR ++ + +A +EG+
Sbjct: 160 KCRYCGKLGHWAKDCCKAKRDREKLAQANLLITEPAQAADEGE 202
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 224 QGIRCQKCLEFGHWSYEC 277
+G RC KC EFGH C
Sbjct: 240 KGARCYKCHEFGHIRRNC 257
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 596 H*KEYQRLHFSCLNRCQIQNHCCSLNQTRSPI-HCCCHYQTSSNPP 462
H +E L + R H + R P H CCHY + PP
Sbjct: 783 HHRELSSLRYRRRRRAYSCCHSDQMETMRRPCSHDCCHYHSCRPPP 828
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,857
Number of Sequences: 37544
Number of extensions: 222605
Number of successful extensions: 676
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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