Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i10
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 472 YNTKFYYVSTYIDNKILRHAPF 407
           Y   F  V T IDN+I    PF
Sbjct: 225 YEETFSLVFTKIDNEIFNRVPF 246


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 240 YSVQNCYIHIISNSYTS 290
           Y + NC IHI S S+ S
Sbjct: 168 YDILNCTIHIASWSHGS 184



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +3

Query: 51  RSQFRWRHSSM---WKGFKNSALNY 116
           + Q+ WRH+S+   W  F   +L Y
Sbjct: 385 KKQYTWRHTSVLIGWSAFLCISLVY 409


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 385 MLFKHRYKMAHDVIFYYQCMYLHNRIWY 468
           M F H+ K   D++ Y +   L +  WY
Sbjct: 30  MDFLHKQKKIFDLLLYVRQADLSDAEWY 57


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 385 MLFKHRYKMAHDVIFYYQCMYLHNRIWY 468
           M F H+ K   D++ Y +   L +  WY
Sbjct: 30  MDFLHKQKKIFDLLLYVRQADLSDAEWY 57


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 426 YYVMRHFVSMFEQHQKLYI 370
           Y + RHF    EQ   LY+
Sbjct: 19  YSLKRHFQDKHEQSDTLYV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,044
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)