Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i08
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   1.4  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   2.4  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.2  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   4.2  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   5.5  
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    25   5.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       24   7.3  

>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 393 TRSGLPRSSELSSYLPILLRVRFDRGILSR 304
           TR+G   SSE  SY  + +++  D G+ +R
Sbjct: 140 TRNGAGPSSEAQSYYSLSMQINSDEGLAAR 169


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 320 RSKRTRSSIGRYDDSSDE 373
           RS RTRS+ GRY D+ D+
Sbjct: 63  RSGRTRSNPGRYVDTDDQ 80


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 390 RSGLPRSSELSSYLPIL 340
           R  LP S+ L+SYLP+L
Sbjct: 45  REALPHSTTLTSYLPLL 61


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 233 GLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTR-SSIGRYDDSSDERGS 382
           G+P S   +D+I  +I   KR    + + R    +  +    +D+ DE GS
Sbjct: 49  GIPNSFPYKDKILAEIEEQKRIREEEKLARRASGQVDAAMEEEDAVDENGS 99


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 224 FMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTR 337
           F   L + + +RDR+  K+R ++  S+     R  R R
Sbjct: 105 FYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLR 142


>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 208 TTIPNELQTLITQQITENLNLGRTNSYY*VDNYFKIITFTSTLFNVNLKL 59
           T    + QTL+ Q++TE +  G       +    ++ T T TL  +N+ L
Sbjct: 11  TLFTKKRQTLVEQKLTEYMIAGEKTDNQMLHFKLQVETATPTLDQLNIML 60


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 RSSSRDSMPRSKRTRSSIGRYDDSSDERGSPE 388
           R  SR+      RTRSS  R+DD  D+R   E
Sbjct: 146 RGDSRERDRDRDRTRSS--RFDDDDDDRAPYE 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,764
Number of Sequences: 5004
Number of extensions: 23990
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)