Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i08
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    28   3.1  
06_01_0169 - 1346281-1349188,1350069-1350184                           27   4.1  
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    27   4.1  
08_02_1084 - 24232968-24234779                                         27   5.4  
07_03_0098 - 13383385-13384392                                         27   7.1  
03_05_0865 - 28365430-28367640                                         27   7.1  
03_05_0749 - 27380979-27382100                                         26   9.4  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    26   9.4  

>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 242 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
           R +R R      +R +++   R    R  R R    R DD ++    PER
Sbjct: 141 RPERRRTEEEEMVRELQKERERSDRNRDYRDRDVRRRKDDGAEPEADPER 190


>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 251 RDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPERV 394
           +DR RI VKIRN+K S   +   R+ R  S     +++ DE  S E V
Sbjct: 103 KDRHRIAVKIRNLK-SRLEEVSSRNTRYNSIKMEANNTFDEIESMEDV 149


>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 242 RSDRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSP 385
           R D  RDR     R+ + SS   S  RS+    S  R    ++ER SP
Sbjct: 333 RQDDRRDRDREGSRHRRSSSRHRSRSRSRSRSRSRSRSRSRNEERSSP 380


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDD 361
           +RDRDR   + R+ +R   RD      R R    RY D
Sbjct: 525 ERDRDRERERDRDRERDRERDRERERDRHRDDRDRYGD 562


>07_03_0098 - 13383385-13384392
          Length = 335

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 233 GLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKR-TRSSIGR 352
           GLPR     +R+  +     RSSSR    R +R +R S+ R
Sbjct: 234 GLPRFQPQNNRVLPRFSFTNRSSSRSDWHRIRRPSRQSLAR 274


>03_05_0865 - 28365430-28367640
          Length = 736

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = +2

Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
           DRDRDR   + R+  R   RD   R  R R       DSS      ER
Sbjct: 77  DRDRDRDRDRDRDRDRERRRDDDSRRDRDRDRDRDRGDSSRRDRDRER 124


>03_05_0749 - 27380979-27382100
          Length = 373

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 227 MIGLPRSDRDRDRITVKIRNMKRS 298
           +I L R+D DRDR+  ++R+   S
Sbjct: 61  VIDLARADADRDRVVAQVRSAAES 84


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 302 SRDSMPRSKRTRSSIGRYDDSSDERGS 382
           S     + K++R    RYDDSSDE  S
Sbjct: 193 SHSEKRKHKKSRKHKRRYDDSSDESNS 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,293,946
Number of Sequences: 37544
Number of extensions: 125459
Number of successful extensions: 341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)