Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8i08
(394 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1) ribonucleopro... 30 2.4
X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA) ... 30 2.4
X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for ... 30 2.4
X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for ... 30 2.4
X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for ... 30 2.4
M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen... 30 2.4
M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small ... 30 2.4
BC002366-1|AAH02366.1| 820|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 30 2.4
BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear ribonucle... 30 2.4
AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein pr... 30 2.4
AF026402-1|AAB87902.1| 820|Homo sapiens U5 snRNP 100 kD protein... 30 2.4
BC112897-1|AAI12898.1| 906|Homo sapiens CLEC16A protein protein. 29 4.1
BC105598-1|AAI05599.1| 259|Homo sapiens DDX46 protein protein. 29 4.1
BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 29 4.1
AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein. 29 4.1
AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein. 29 4.1
AB002348-1|BAA20807.3| 1062|Homo sapiens KIAA0350 protein protein. 29 4.1
X16105-1|CAA34231.1| 325|Homo sapiens protein ( Human mRNA for ... 29 5.5
M33231-1|AAA36308.1| 382|Homo sapiens protein ( Human MHC class... 29 5.5
L40403-1|AAC42008.1| 331|Homo sapiens protein ( Homo sapiens (c... 29 5.5
L03411-1|AAC37523.1| 380|Homo sapiens RD protein protein. 29 5.5
BX005143-11|CAM25867.1| 294|Homo sapiens RD RNA binding protein... 29 5.5
BX005143-10|CAM25866.1| 334|Homo sapiens RD RNA binding protein... 29 5.5
BX005143-9|CAM25865.1| 380|Homo sapiens RD RNA binding protein ... 29 5.5
BC050617-1|AAH50617.1| 380|Homo sapiens RD RNA binding protein ... 29 5.5
BC025235-1|AAH25235.1| 380|Homo sapiens RD RNA binding protein ... 29 5.5
AL844853-13|CAI41861.1| 380|Homo sapiens RD RNA binding protein... 29 5.5
AL662849-9|CAM24861.1| 294|Homo sapiens RD RNA binding protein ... 29 5.5
AL662849-8|CAM24860.1| 334|Homo sapiens RD RNA binding protein ... 29 5.5
AL662849-7|CAI17457.1| 380|Homo sapiens RD RNA binding protein ... 29 5.5
AL645922-10|CAM25397.1| 294|Homo sapiens RD RNA binding protein... 29 5.5
AL645922-9|CAM25396.1| 334|Homo sapiens RD RNA binding protein ... 29 5.5
AL645922-8|CAI41728.1| 380|Homo sapiens RD RNA binding protein ... 29 5.5
AF019413-7|AAB67979.1| 380|Homo sapiens RD protein. 29 5.5
AB037798-1|BAA92615.1| 988|Homo sapiens KIAA1377 protein protein. 28 9.5
>X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1)
ribonucleoprotein protein.
Length = 437
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 228 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 280
>X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA)
protein.
Length = 285
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 76 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 128
>X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for
hU1-70K small nuclear RNP protein (RNP12). ).
Length = 233
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 43 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 95
>X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for
hU1-70K snRNP protein (RNP8). ).
Length = 301
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 179 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 231
>X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for U1
RNA-associated 70K protein. ).
Length = 614
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 405 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 457
>M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen
protein.
Length = 437
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 228 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 280
>M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein 70 kd protein mRNA, complete
cds. ).
Length = 437
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 228 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 280
>BC002366-1|AAH02366.1| 820|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23 protein.
Length = 820
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DRDRDR + ++ KR SRD R+RS R + ER ER
Sbjct: 31 DRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSR-SRSKSAERERRHKER 77
>BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear
ribonucleoprotein 70kDa polypeptide (RNP antigen)
protein.
Length = 437
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 228 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 280
>AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein
protein.
Length = 341
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 LPRSDRDRDRITV-KIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
LP DRDRDR + R+ +R R+ R R R D + R S ER
Sbjct: 132 LPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER 184
>AF026402-1|AAB87902.1| 820|Homo sapiens U5 snRNP 100 kD protein
protein.
Length = 820
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DRDRDR + ++ KR SRD R+RS R + ER ER
Sbjct: 31 DRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSR-SRSKSAERERRHKER 77
>BC112897-1|AAI12898.1| 906|Homo sapiens CLEC16A protein protein.
Length = 906
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 303 DELRFILRIFTVIRSLSLSLRGNP 232
++ R +R+F ++RSLSL LRG P
Sbjct: 643 EKTRRAIRVFFMLRSLSLQLRGEP 666
>BC105598-1|AAI05599.1| 259|Homo sapiens DDX46 protein protein.
Length = 259
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDER 376
DRDR R + R+ +RS SRD KR R S R D S ER
Sbjct: 44 DRDRRRERSRSRDKRRSRSRD----RKRLRRSRSRERDRSRER 82
>BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46 protein.
Length = 1031
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDER 376
DRDR R + R+ +RS SRD KR R S R D S ER
Sbjct: 44 DRDRRRERSRSRDKRRSRSRD----RKRLRRSRSRERDRSRER 82
>AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.
Length = 1031
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDER 376
DRDR R + R+ +RS SRD KR R S R D S ER
Sbjct: 44 DRDRRRERSRSRDKRRSRSRD----RKRLRRSRSRERDRSRER 82
>AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.
Length = 1058
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDER 376
DRDR R + R+ +RS SRD KR R S R D S ER
Sbjct: 70 DRDRRRERSRSRDKRRSRSRD----RKRLRRSRSRERDRSRER 108
>AB002348-1|BAA20807.3| 1062|Homo sapiens KIAA0350 protein protein.
Length = 1062
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 303 DELRFILRIFTVIRSLSLSLRGNP 232
++ R +R+F ++RSLSL LRG P
Sbjct: 670 EKTRRAIRVFFMLRSLSLQLRGEP 693
>X16105-1|CAA34231.1| 325|Homo sapiens protein ( Human mRNA for RD
protein, RNA-binding. ).
Length = 325
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 158 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 205
>M33231-1|AAA36308.1| 382|Homo sapiens protein ( Human MHC class
III HLA-RD gene, exon 11. ).
Length = 382
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 214 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 261
>L40403-1|AAC42008.1| 331|Homo sapiens protein ( Homo sapiens
(clone zap3) mRNA, 3' end of cds. ).
Length = 331
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DRDRDR + + R+ PR R +S + D SS RG +R
Sbjct: 127 DRDRDRXVIDYDRDR--FDRERRPRDDRAQSYRDKKDHSSSRRGGFDR 172
>L03411-1|AAC37523.1| 380|Homo sapiens RD protein protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>BX005143-11|CAM25867.1| 294|Homo sapiens RD RNA binding protein
protein.
Length = 294
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>BX005143-10|CAM25866.1| 334|Homo sapiens RD RNA binding protein
protein.
Length = 334
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 208 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 255
>BX005143-9|CAM25865.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>BC050617-1|AAH50617.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>BC025235-1|AAH25235.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AL844853-13|CAI41861.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AL662849-9|CAM24861.1| 294|Homo sapiens RD RNA binding protein
protein.
Length = 294
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AL662849-8|CAM24860.1| 334|Homo sapiens RD RNA binding protein
protein.
Length = 334
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 208 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 255
>AL662849-7|CAI17457.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AL645922-10|CAM25397.1| 294|Homo sapiens RD RNA binding protein
protein.
Length = 294
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AL645922-9|CAM25396.1| 334|Homo sapiens RD RNA binding protein
protein.
Length = 334
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 208 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 255
>AL645922-8|CAI41728.1| 380|Homo sapiens RD RNA binding protein
protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AF019413-7|AAB67979.1| 380|Homo sapiens RD protein.
Length = 380
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 248 DRDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
DR+RDR + R+ R RD R R R DS ER +P +
Sbjct: 213 DRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRK 260
>AB037798-1|BAA92615.1| 988|Homo sapiens KIAA1377 protein protein.
Length = 988
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 302 SRDSMPRSKRTRSSIGRYDDSSDERGSPER 391
++ + P SK+ S I +DDS ++G P+R
Sbjct: 593 AKHAWPASKKEESKIPVHDDSKTKQGKPQR 622
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,301,139
Number of Sequences: 237096
Number of extensions: 680019
Number of successful extensions: 1769
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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