Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8i08
(394 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 24 0.72
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 0.95
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 0.95
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 2.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 2.9
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 5.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 5.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 5.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 5.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 20 8.8
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 0.72
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDERGSPER 391
S+S S RS +RT S RY+DS E G+ R
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYR 246
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.4 bits (48), Expect = 0.95
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 297 LRFILRIFTVIRSLSLSLRGNPIMKAHFDELLSQTN 190
++ ++ I ++ L GNP K +D+LLS N
Sbjct: 2 MKSLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYN 37
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.4 bits (48), Expect = 0.95
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 273 TVIRSLSLSL-RGNPIMKAHFDELLSQTN 190
T+I LS + GNP K +D+LLS N
Sbjct: 5 TIILILSARICHGNPDAKRLYDDLLSNYN 33
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 249 SLRGNPIMKAHFDELLSQTN 190
++ GNP K +D+LLS N
Sbjct: 22 AVAGNPDAKRLYDDLLSNYN 41
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 249 SLRGNPIMKAHFDELLSQTN 190
++ GNP K +D+LLS N
Sbjct: 22 AVAGNPDAKRLYDDLLSNYN 41
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDE 373
S+S S RS +RT S RY+DS E
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDE 373
S+S S RS +RT S RY+DS E
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDE 373
S+S S RS +RT S RY+DS E
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.0 bits (42), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDE 373
S+S S RS +RT S RY+DS E
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.0 bits (42), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 296 SSSRDSMPRS-KRTRSSIGRYDDSSDE 373
S+S S RS +RT S RY+DS E
Sbjct: 214 SNSLRSRSRSFQRTSSCHSRYEDSRHE 240
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.0 bits (42), Expect = 5.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 353 TYQYCCVSVLIAAYY 309
T+ YC +LI YY
Sbjct: 217 TFSYCIPMILIIYYY 231
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 20.2 bits (40), Expect = 8.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 251 RDRDRITVKIRNMKRSSSRDSMPRSKRTRSSIG 349
++RDR+T + ++ + S K + SS G
Sbjct: 332 KERDRLTAMMHHLHVAKQMASPEPPKSSESSTG 364
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,822
Number of Sequences: 438
Number of extensions: 1599
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9638226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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