Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i07
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    67   2e-12
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.8  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   2.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.4  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   4.2  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   9.6  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   9.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   9.6  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
 Frame = +2

Query: 152 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLGKISDWTMVQDK------------ 295
           F  P +    + WGP E      D+PY PFSKGDRLGKI+DW++ Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 296 --KYQNKYASQ-FGAGSSYAYFHDEDESTFHLVDTTRVQK 406
             +++++Y +  +GA S + Y H EDES+F ++D   V +
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 78  WFKIVT*HSELRCRNTYCRPKGR*GLFHP 164
           W+  V  + ELRC+N YC    R G+  P
Sbjct: 576 WWTPVYVNQELRCKNAYCDSIQRKGIKFP 604


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 186 PVGLSCIMGEINLIGPSAGSTCSDIAVHYVKLQS*TTNN*VGTMYS 49
           P  LS     +NL+G   G   SD   H+V  +   ++  VGTMY+
Sbjct: 123 PEMLSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYA 168


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 494 LNKPRERKLGKRWGQRGAPMKIRDASVTVRPTWVTIE 604
           L+KPR  ++ +++ Q+G   KI+      + TWV  E
Sbjct: 46  LDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSE 82


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 616 EVHIFNRDPCWPYSYRC 566
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 406 AVPVISAWAGSRTAWSWCQGCTYSWWYDNIEQAT 507
           A  ++S WAG    + W Q  T   + DN   AT
Sbjct: 302 AKDIVSIWAGLPFVFVWLQHITAEVFIDNEHVAT 335


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 545 HHVDPTSYQACVHVA-CSMLSYHQEYVHPWHHDHAVLEPAH 426
           H ++  S ++C++   C    YHQ Y H          P H
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLSRTFFSPTH 43


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 155 ISPIIQDNPTGWGPYEMPDQFRDMPYQ 235
           + PII  NP  W PY     FR  P Q
Sbjct: 20  LPPIILTNPLTWIPYIYRYLFRKTPRQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,202
Number of Sequences: 5004
Number of extensions: 60784
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)