Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8i07
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         40   0.002
10_01_0255 + 2684534-2684601,2684662-2684772,2684853-2684934,268...    29   4.3  
02_03_0279 + 17250347-17252098                                         28   5.7  
03_06_0682 - 35516081-35518303                                         28   7.5  

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = +2

Query: 146 MRFISPIIQDNPTGWGPYEM---PDQF------RDMPYQPFSKGDRLGKISDWT 280
           M F   ++  NP GWGP +    P           +P+ PFS+ D+LG+I+DWT
Sbjct: 1   MGFDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWT 54


>10_01_0255 +
           2684534-2684601,2684662-2684772,2684853-2684934,
           2685004-2685088,2685195-2685358
          Length = 169

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 470 VHPWHHDHAVLEPAH-ADMTGTAFVL 396
           V+PW H   VL+PAH A+ T T F++
Sbjct: 31  VYPWDHLVVVLDPAHYAEKTFTEFLV 56


>02_03_0279 + 17250347-17252098
          Length = 583

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 533 PTSYQACVHVACSMLSYHQEYVHPWHHDHAVLEPAHADMTGTAFVL 396
           P S+ +C H +     YH +Y H  HH H +   A +     A V+
Sbjct: 355 PLSHGSCSHGSNHRHHYHYQYHH--HHHHIIASSAASSAATAASVV 398


>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 371 CFHLHH---GSMHKTNQRRTVMHTCSGTSCLAPLSNHLSCLIDRLC*MADRAC 222
           C +LH    G+ + T  R    H C     + P   HL+CL    C +A  AC
Sbjct: 630 CSNLHRLPKGTKYMTALRHLYTHGCERLKSMPPNLGHLTCLQTLTCFVAG-AC 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,853
Number of Sequences: 37544
Number of extensions: 419795
Number of successful extensions: 912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)