Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8i05
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704... 29 2.9
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 29 2.9
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 29 2.9
11_06_0224 + 21447875-21448944,21449465-21449624 28 5.1
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 27 6.8
02_04_0131 - 20046033-20046505,20047140-20047233,20047343-200474... 27 6.8
07_03_1191 + 24690936-24691029,24691184-24691377 27 8.9
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 27 8.9
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 27 8.9
>11_01_0800 -
7047425-7048253,7048340-7048927,7049050-7049268,
7049398-7049518,7050593-7050983
Length = 715
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +1
Query: 145 NCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATD--- 315
+C TAS +L+ K R + I + R W+ SCG+ D
Sbjct: 579 DCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGE 638
Query: 316 RILSKSTSH 342
R+LS T H
Sbjct: 639 RMLSCDTCH 647
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 361 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 254
MM L + GK I CP+P+HSL SMV R +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 152 VQFVLEVLVRRAHAVRG*FHDAGAGSEHAHCEHNEKFHFVRSLFRSLSRL 3
+++ ++LV H++ H HA ++ + HFV + SLSRL
Sbjct: 1836 IRYTKKILVEEGHSIPNMIHIFQLIVRHADLFYSCRAHFVPQMVNSLSRL 1885
>11_06_0224 + 21447875-21448944,21449465-21449624
Length = 409
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 166 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILLGAFS 20
+R +L +L + + LML T+PA+AA+ + N T FI + A S
Sbjct: 133 LRFVLLALGGVTGFQALMLQGMKRTSPAIAAA--MPNLTPGFIFVVAAS 179
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 282 EYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIA 452
+YC V + D+ + L L + GN ++ N +L K+G+ SN IA
Sbjct: 248 QYC----VASEMDVAVRVLKLYAALALCGNGAMVLLNNEDLMAKVGALLGKSNPSIA 300
>02_04_0131 -
20046033-20046505,20047140-20047233,20047343-20047434,
20047560-20047611,20047721-20047878,20048190-20048280,
20048397-20049455
Length = 672
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 105 ADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVV 245
+DS+ + + D N DY+S+ R+S QGQ ++ +V
Sbjct: 110 SDSILAATDNTNDSADNCTRDVDYNSSGRRSTTSHDQGQHDVLSEIV 156
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -3
Query: 303 PTACSSTPWCSVSCQ*SDC*LHFERC---CPGLGSRIPSSYVQHCRSHR*GCCCT 148
P C + CQ ++ E+C C G G + S Y CR + CCCT
Sbjct: 26 PAVCYAHVEAKTVCQKTEYGCTQEKCHQMCLGDGRTVASQY---CRHYDTQCCCT 77
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -3
Query: 219 GLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG*K 121
G G +PS HR GC C VC P G G K
Sbjct: 599 GEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPK 634
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 153 NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYC 290
+S GD+ S VR S+ Q V V NL++ RR C
Sbjct: 807 SSFQMGDFGSHVRCMKNIPSENQMQAVAQEVQNLLVSGRRKEALQC 852
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,817
Number of Sequences: 37544
Number of extensions: 279038
Number of successful extensions: 844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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