Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h23
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0011 - 8513471-8513673,8513815-8513869                           29   3.3  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    29   3.3  
09_04_0350 + 16899076-16900164                                         28   5.8  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   7.7  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   7.7  

>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 213 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 350
           AP T +   C+D T K +C+     +  C     L YCN   C+ +P
Sbjct: 33  APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77


>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
            4034616-4034839,4035168-4035332,4035591-4035881,
            4035971-4036303,4036391-4036485,4036570-4036689,
            4036778-4036934,4037176-4037279,4037383-4037543,
            4037636-4037952,4038655-4038936,4039020-4039321,
            4039453-4039543,4040227-4040280,4040367-4040684,
            4041008-4041092,4041178-4041266,4041474-4041594,
            4042136-4042431
          Length = 1434

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 348  PAEGCEPASGASVAPTA*YSILKHTRKYI-TDTKKKIFLEKTNKKCNQKVFLYHYVVLFN 524
            P  G +  S A V  T   +I+   R  + T  +  I + ++  + N+++FLY YV+ FN
Sbjct: 1029 PTSGLDARSAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDEGNREIFLYKYVLTFN 1087

Query: 525  KYEYI 539
            ++ ++
Sbjct: 1088 QHPFL 1092


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/41 (51%), Positives = 22/41 (53%)
 Frame = -1

Query: 221 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 99
           AR P  V  SG + WR  R D A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108


>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 259  LVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 158
            L ++ RQ  P+V+ G  C ++G D I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 218 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 126
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,298
Number of Sequences: 37544
Number of extensions: 297473
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)