Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h21
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   2.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   5.8  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   7.7  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 15  HPSNAPHVATL*SFLNASLLMEII 86
           +P NAPH +   SF+ A+ L EI+
Sbjct: 187 YPKNAPHASKTMSFILANQLSEIV 210


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 LKLFRHEVSPVAALLGVCCDV 218
           L L R+ VSPV  +  VCCD+
Sbjct: 466 LVLSRNAVSPVPQVFEVCCDI 486


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 317 WPAPSKASTIPLPRELWLREGIG 249
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 SARVPRALRVPDTFTQPQLPRQRDSRR 299
           +++V   L  P    QPQLP++ DS+R
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQR 346


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 482 VILAAKVLINAIPASAFLWSFMSIISLTEAVALTSIIFRPLVDSLGGNG 336
           V+L   +L+N +P   + W F + + L     + +II+ P+  S   +G
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKASMLLMFIDYVMNIIWVPVATSKKPDG 264


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 254 IGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQCTIEI*QVYMSLIISQNK 102
           I N  ST   +  V   T K+  W HL  +     +EI Q  +S  IS +K
Sbjct: 258 IANLLST--RKRSVAFVTSKTVEWLHLSDDDIVKKVEIEQYIVSRAISLHK 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,165
Number of Sequences: 5004
Number of extensions: 39678
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)