Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8h21
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.63
07_03_0425 - 18070607-18070712,18071771-18072744 31 0.84
04_01_0020 + 307110-307809,308412-308476,309245-309544 30 1.1
01_01_0244 - 2005152-2005649,2006186-2006254 29 2.6
07_03_0418 + 17979504-17980964 29 3.4
07_03_0415 + 17920383-17921843 29 3.4
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 28 5.9
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 27 7.8
01_07_0089 - 40999824-41000111,41000184-41000321,41000359-410008... 27 7.8
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 27 7.8
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 368 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 270
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 217 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 330
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>04_01_0020 + 307110-307809,308412-308476,309245-309544
Length = 354
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 214 TSARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVT 327
T RA ++ F +P ++ G++DAL G GH +T
Sbjct: 13 TCIRALELIFTFVVPMTLKATIKLGLLDALTGGGHALT 50
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 368 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 270
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 217 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 330
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 217 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 330
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 398 EAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 279
+ V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +1
Query: 340 FPPKESTKGLKIIDVSATASVSEMIDMNDQRNADAGIALIRTFAANITRLSLSVPALQQA 519
F K S K L T ++S+ + ND+ + ++ + + +L+ VPA +
Sbjct: 217 FSNKPSLKDLVFAQAKTTDALSKKLAANDKILENINLSFNKMIETQLAQLTSYVPANETG 276
Query: 520 IVXGKYDAVV 549
+ G+ D+ V
Sbjct: 277 RIPGQPDSSV 286
>01_07_0089 -
40999824-41000111,41000184-41000321,41000359-41000840,
41001532-41001601
Length = 325
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 441 CWYRVDQDLRCQYHEAVPLGTSAAAGDRXR 530
CWYRV LR H A L +AA R
Sbjct: 57 CWYRVVAALRAAGHRATALDMAAAGAHPAR 86
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 138 LYFDSALKLFRHEVSPVAALLGVCCDVSARVPRA 239
L ++ KLF ++ A++LGVC V R+ R+
Sbjct: 45 LSYEEISKLFSLPIAEAASILGVCTSVLKRICRS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,881
Number of Sequences: 37544
Number of extensions: 287704
Number of successful extensions: 858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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